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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 175total RNA-seq
  • 152single cell RNA-seq
  • 128ATAC-seq
  • 106ChIP-seq
  • 80snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 331Transcription
  • 208DNA accessibility
  • 106DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 168August, 2021
  • 153May, 2021
  • 134May, 2022
  • February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1October, 2017
Available data
  • 213bigWig
  • 186bam
  • 168bed narrowPeak
  • 153zippedFastqFolder
  • 114tsv
  • 94fastq
  • 84tagAlign
  • 64xls
  • 57txt
  • 7hic
  • 5bedpe bed3+
  • 3cool
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 720Homo sapiens
Biosample type
  • 453primary cell
  • 226tissue
  • 40cell line
  • 4in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 136pancreas
  • 119epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 248HPAP
  • 221T1D
  • 185AMP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 274GRCh38
  • 212hg19
Lab
  • 248Klaus Kaestner, Upenn
  • 213Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 4Struan F.A. Grant, CHOP
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 10inconsistent ontology term
award.rfa!
  • AMP
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

725 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell1529311
pancreatic beta cell116161
peripheral blood mononuclear cell8
tissue
kidney49587561
lung910
islet of Langerhans32242
pancreas4
thymus1
cell line
HepG2918121
EndoC_BH122
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
stem cell
SB Ad3.111
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