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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 205total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 83snATAC-seq
  • 47WGBS
  • 21ChIP-seq
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 361Transcription
  • 225DNA accessibility
  • 47DNA methylation
  • 21DNA binding
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 11transcription factor
  • 6histone
  • 6histone modification
  • 5narrow histone mark
  • 4control
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 168August, 2021
  • May, 2021
  • 134May, 2022
  • 102February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1July, 2025
  • 1October, 2017
Available data
  • 170fastq
  • 153zippedFastqFolder
  • 85bed narrowPeak
  • 80bigWig
  • 64tsv
  • 64xls
  • 60txt
  • 50bam
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 669Homo sapiens
Biosample type
  • 378primary cell
  • 244tissue
  • 44cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 190pancreas
  • 155epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 4connective tissue
  • 1musculature of body
Project
  • 324HPAP
  • 189AMP
  • 91T1D
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 139GRCh38
  • 79hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 84Kyle Gaulton, UCSD
  • 47KPMP
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 7AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Stephen Parker, UMich
  • 1ITG
Audit category:
  • 30audit script error
  • 9inconsistent ontology term
award.rfa!
  • AMP
month_released!
  • May, 2021
BIOSAMPLE
ASSAY

675 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
peripheral blood mononuclear cell8
tissue
kidney49587561
islet of Langerhans813622
lung910
pancreas4
skeletal muscle tissue1
cell line
HepG2918121
EndoC_BH12132
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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