Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 280accessible chromatin
  • 212gene expression
  • 123target gene predictions
  • 113differential activity
  • 30candidate regulatory elements
  • 6binding sites
  • 6caQTL
  • 6eQTL
  • 1variant allelic effects
Date released
  • 283November, 2021
  • 269September, 2023
  • 54January, 2021
  • 49February, 2024
  • 46August, 2021
  • 30May, 2024
  • 16April, 2020
  • 9March, 2023
  • 7February, 2021
  • 6October, 2022
  • 4May, 2022
  • 3November, 2022
  • 1February, 2023
Available data
  • 448bed bed3+
  • 306tsv
  • 267bigWig
  • 24txt
Organism
  • 776Homo sapiens
Collection Tags
  • 302AMP
  • 284T2DKP
  • 266KPMP
  • 109DGA
  • 57T1D
  • 53 T2DKP
  • 20FNIH_projects-heart
  • 12CMDGA
  • 10FNIH_projects-liver
  • 4ENCODE
Biosample type
  • 745primary cell
  • 16tissue
  • 9cell line
  • 5in vitro differentiated cells
  • 1stem cell
Organ
  • 369epithelium
  • 178kidney
  • connective tissue
  • 61vasculature
  • 40pancreas
  • 39blood vessel
  • 31liver
  • 25musculature of body
  • 19intestine
  • 12heart
  • 12lung
  • 12lymphatic vessel
  • 10adrenal gland
  • 10skin of body
  • 9stomach
  • 6large intestine
  • 6mammary gland
  • 5artery
  • 4esophagus
  • 4eye
  • 4small intestine
  • 3bone element
  • 3bone marrow
  • 3brain
  • 3bronchus
  • 3extraembryonic component
  • 2embryo
  • 2gonad
  • 2ovary
  • 2placenta
  • 2thyroid gland
  • 2uterus
  • 1thymus
Project
  • 283ENCODE
  • 266KPMP
  • 144AMP
  • 58T1D
  • 16LungMap
  • 9community
  • 1ITG
Genome assembly (visualization)
  • 457hg19
  • 351GRCh38
award.rfa!
  • AMP
organ_slims!
  • connective tissue
BIOSAMPLE
TYPE

777 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
candidate regulatory elements
binding sites
caQTL
eQTL
variant allelic effects
primary cell
endothelial cell1447311
smooth muscle cell816211
macrophage12123
endothelial cell of hepatic sinusoid646
hepatocyte6511
tissue
kidney771
synovial joint1
cell line
induced pluripotent stem cell7
EndoC_BH12
in vitro differentiated cells
ESC dervived hypothalamic neuron (arcuate nucleus)1
ESC dervived hypothalamic progenitor (arcuate nucleus)1
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego