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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 63total RNA-seq
  • 62ATAC-seq
  • 47WGBS
  • 10snATAC-seq
  • 5Hi-C
  • 4ChIP-seq
Assay category
  • 72DNA accessibility
  • 63Transcription
  • 47DNA methylation
  • 53D chromatin structure
  • 4DNA binding
Target of assay
  • 4histone
  • 4histone modification
  • 4narrow histone mark
Date released
  • 80May, 2022
  • 55February, 2023
  • 19September, 2020
  • 8January, 2021
  • 7August, 2020
  • 7March, 2020
  • 6February, 2021
  • 3October, 2022
  • 2August, 2021
  • 2March, 2019
  • 1May, 2021
  • 1October, 2017
Available data
  • 80zippedFastqFolder
  • 70fastq
  • 17bigWig
  • 9tsv
  • 6bam
  • 4bed narrowPeak
  • 4bedpe bed3+
  • 4hic
  • 3cool
  • 1bed broadPeak
  • 1bedpe
Organism
  • 191Homo sapiens
Biosample type
  • 152primary cell
  • 35tissue
  • 4cell line
Organ
  • 191kidney
  • 191pancreas
  • 156epithelium
  • 31liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 152HPAP
  • 34T1D
  • 5AMP
Genome assembly (visualization)
  • 18GRCh38
  • 12hg19
Lab
  • 152Klaus Kaestner, Upenn
  • 26Kyle Gaulton, UCSD
  • 8AMP-T2D consortium
  • 4Bing Ren, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 4inconsistent ontology term
  • 3audit script error
award.rfa!
  • AMP
BIOSAMPLE
ASSAY

191 results

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Clear Filters
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell4229311
pancreatic beta cell1116161
pancreatic acinar cell41
tissue
islet of Langerhans813622
pancreas4
cell line
EndoC_BH122
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