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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
total RNA-seq
62
ATAC-seq
47
WGBS
10
snATAC-seq
5
Hi-C
4
ChIP-seq
Assay category
72
DNA accessibility
63
Transcription
47
DNA methylation
5
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
80
May, 2022
55
February, 2023
19
September, 2020
8
January, 2021
7
August, 2020
7
March, 2020
6
February, 2021
3
October, 2022
2
August, 2021
2
March, 2019
1
May, 2021
1
October, 2017
Available data
80
zippedFastqFolder
70
fastq
17
bigWig
9
tsv
6
bam
4
bed narrowPeak
4
bedpe bed3+
4
hic
3
cool
1
bed broadPeak
1
bedpe
Organism
191
Homo sapiens
Biosample type
152
primary cell
35
tissue
4
cell line
Organ
191
kidney
191
pancreas
156
epithelium
31
liver
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
152
HPAP
34
T1D
5
AMP
Genome assembly (visualization)
18
GRCh38
12
hg19
Lab
152
Klaus Kaestner, Upenn
26
Kyle Gaulton, UCSD
8
AMP-T2D consortium
4
Bing Ren, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
award.rfa!
AMP
BIOSAMPLE
ASSAY
191 results
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Clear Filters
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
8
13
6
2
2
pancreas
4
cell line
EndoC_BH1
2
2
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