Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
211
total RNA-seq
152
single cell RNA-seq
5
STARR-seq
2
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
367
Transcription
2
DNA accessibility
Date released
81
February, 2023
72
August, 2021
56
September, 2020
51
May, 2021
47
September, 2023
33
May, 2022
12
February, 2021
10
April, 2020
4
March, 2020
4
March, 2023
3
May, 2023
1
July, 2025
Available data
126
fastq
64
tsv
57
txt
53
bam
53
bigWig
52
zippedFastqFolder
1
bed bed3+
1
tbi
Organism
368
Homo sapiens
Biosample type
228
primary cell
126
tissue
18
cell line
2
stem cell
Organ
109
kidney
63
pancreas
55
epithelium
11
liver
10
lung
1
musculature of body
Project
177
HPAP
76
AMP
60
T1D
47
KPMP
10
LungMap
4
community
Genome assembly (visualization)
54
GRCh38
53
hg19
Lab
177
Klaus Kaestner, Upenn
60
Katalin Susztak, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
15
Bing Ren, UCSD
10
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
award.rfa!
AMP
replicates.library.nucleic_acid_term_name!
DNA
BIOSAMPLE
ASSAY
374 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
STARR-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
51
pancreatic alpha cell
42
exocrine cell
39
pancreatic beta cell
11
tissue
kidney
49
58
lung
9
1
islet of Langerhans
8
skeletal muscle tissue
1
cell line
HepG2
9
2
EndoC-BH1
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
Download