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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 142ATAC-seq
  • 106ChIP-seq
  • 82snATAC-seq
  • 47WGBS
  • 45total RNA-seq
  • 17pCHi-C
  • 8Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 224DNA accessibility
  • 106DNA binding
  • 49Transcription
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 102May, 2021
  • 101May, 2022
  • 96August, 2021
  • 45May, 2020
  • 33February, 2021
  • 21February, 2023
  • 16January, 2021
  • 11May, 2023
  • 10April, 2020
  • 7August, 2020
  • 5March, 2023
  • 3March, 2020
  • 3October, 2022
  • 3September, 2020
  • 2March, 2019
  • 1October, 2017
Available data
  • 170bed narrowPeak
  • 163bigWig
  • 133bam
  • 101zippedFastqFolder
  • 84tagAlign
  • 64xls
  • 51tsv
  • 44fastq
  • 7hic
  • 5bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 3txt
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1vcf
Organism
  • 454Homo sapiens
Biosample type
  • 301primary cell
  • 120tissue
  • 29cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 128pancreas
  • 101epithelium
  • 82kidney
  • 20liver
  • 10lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 184T1D
  • 147HPAP
  • 113AMP
  • 10LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 221GRCh38
  • 162hg19
Lab
  • 180Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 23Bing Ren, UCSD
  • 10Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 30audit script error
  • 8inconsistent ontology term
award.rfa!
  • AMP
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

459 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte8421
pancreatic alpha cell29311
Langerhans cell48
pancreatic beta cell16161
peripheral blood mononuclear cell8
tissue
kidney7561
islet of Langerhans13262
lung10
pancreas4
thymus1
cell line
HepG21811
EndoC_BH1232
EndoC-BH111
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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