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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 184total RNA-seq
  • 152single cell RNA-seq
  • 127ATAC-seq
  • 78snATAC-seq
  • 58ChIP-seq
  • 47WGBS
  • 13pCHi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 340Transcription
  • 205DNA accessibility
  • 58DNA binding
  • 47DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 43histone
  • 43histone modification
  • 26broad histone mark
  • 17narrow histone mark
  • 11transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 162August, 2021
  • 134May, 2022
  • 84February, 2023
  • 80May, 2021
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 19April, 2020
  • 14January, 2021
  • 14May, 2023
  • 7August, 2020
  • 4March, 2023
  • 4May, 2020
  • 3March, 2020
Available data
  • 169fastq
  • 153zippedFastqFolder
  • 120bed narrowPeak
  • 101bigWig
  • 74bam
  • 64xls
  • 60txt
  • 49tsv
  • 38tagAlign
  • 3bed bedgraph
  • 2hic
  • 1bedpe bed3+
  • 1vcf
Organism
  • 671Homo sapiens
Biosample type
  • 409primary cell
  • 217tissue
  • 45cell line
  • 3in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 161pancreas
  • 153epithelium
  • 31liver
  • 19lung
  • 6blood
  • 6bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • 321HPAP
  • 179AMP
  • 106T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 159GRCh38
  • 93hg19
Lab
  • 321Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 102Kyle Gaulton, UCSD
  • 47KPMP
  • 34Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 4Anna Gloyn, Oxford
  • 3Struan F.A. Grant, CHOP
Audit category:
  • 27audit script error
  • 7inconsistent ontology term
award.rfa!
  • AMP
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

676 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell422931
monocyte28381
pancreatic beta cell111616
exocrine cell39
tissue
kidney49587561
lung910
islet of Langerhans4
pancreas4
thymus1
cell line
HepG2918211
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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