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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74total RNA-seq
  • 52ChIP-seq
  • 18ATAC-seq
  • 17pCHi-C
  • 11snATAC-seq
  • 6Hi-C
  • 6WGBS
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
Assay category
  • 74Transcription
  • 52DNA binding
  • 29DNA accessibility
  • 63D chromatin structure
  • 6DNA methylation
Target of assay
  • 50histone
  • 50histone modification
  • 31narrow histone mark
  • 19broad histone mark
  • 2transcription factor
Date released
  • 87May, 2021
  • 41May, 2020
  • 24February, 2023
  • 16August, 2021
  • 7March, 2020
  • 6February, 2021
  • 5January, 2021
  • 3October, 2022
  • 2March, 2019
  • 1March, 2023
  • 1October, 2017
Available data
  • 124bigWig
  • 116bam
  • 73tsv
  • 56bed narrowPeak
  • 46tagAlign
  • 7fastq
  • 5hic
  • 4bedpe bed3+
  • 3bed bedgraph
  • 3cool
  • 3txt
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
Organism
  • 193Homo sapiens
Biosample type
  • 138primary cell
  • 35tissue
  • 13cell line
  • 7in vitro differentiated cells
Organ
  • 43pancreas
  • 13epithelium
  • 6kidney
  • 5connective tissue
  • 4liver
  • 2blood
  • 2bodily fluid
  • 1bone element
  • 1bone marrow
  • 1thymus
Project
  • 161T1D
  • 22AMP
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 131hg19
  • 119GRCh38
Lab
  • 153Kyle Gaulton, UCSD
  • 10Bing Ren, UCSD
  • 9Klaus Kaestner, Upenn
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Katalin Susztak, Upenn
  • 1ITG
  • 1Stephen Parker, UMich
Audit category:
  • 10inconsistent ontology term
  • 3audit script error
award.rfa!
  • AMP
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

193 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
Hi-C
WGBS
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
primary cell
monocyte25461
pancreatic alpha cell16
B cell21
CD8-positive, alpha-beta T cell21
naive B cel21
tissue
islet of Langerhans821332
kidney4
pancreas2
thymus1
cell line
EndoC_BH1223
HepG222
HEK293T2
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
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