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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
48
ChIP-seq
15
ATAC-seq
6
Hi-C
4
pCHi-C
4
snATAC-seq
2
Capture-C
Assay category
72
Transcription
48
DNA binding
19
DNA accessibility
6
3D chromatin structure
Target of assay
48
histone
48
histone modification
29
narrow histone mark
19
broad histone mark
Date released
73
May, 2021
41
May, 2020
18
February, 2023
6
August, 2021
4
March, 2020
3
October, 2022
2
January, 2021
2
March, 2019
1
March, 2023
1
October, 2017
Available data
115
bigWig
112
bam
65
tsv
50
bed narrowPeak
46
tagAlign
5
hic
4
bedpe bed3+
3
cool
2
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
Organism
151
Homo sapiens
Biosample type
120
primary cell
27
tissue
4
in vitro differentiated cells
Organ
30
pancreas
4
connective tissue
3
epithelium
2
blood
2
bodily fluid
Project
138
T1D
9
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
122
hg19
115
GRCh38
Lab
134
Kyle Gaulton, UCSD
4
AMP-T2D consortium
4
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
ITG
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
3
audit script error
award.rfa!
AMP
BIOSAMPLE
ASSAY
151 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
snATAC-seq
Capture-C
primary cell
monocyte
25
46
CD8-positive, alpha-beta T cell
2
1
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 24 more…
tissue
islet of Langerhans
8
2
13
2
2
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
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