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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
pCHi-C
7
snATAC-seq
6
WGBS
4
ChIP-seq
4
STARR-seq
3
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
total RNA-seq
Assay category
10
DNA accessibility
6
DNA methylation
4
DNA binding
2
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
14
May, 2021
10
August, 2021
6
February, 2021
6
February, 2023
3
January, 2021
3
March, 2020
Available data
9
bigWig
8
tsv
6
bed narrowPeak
6
fastq
4
bam
3
bed bedgraph
3
txt
Organism
42
Homo sapiens
Biosample type
18
primary cell
13
cell line
8
tissue
3
in vitro differentiated cells
Organ
13
pancreas
10
epithelium
6
kidney
4
liver
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
23
T1D
13
AMP
6
HPAP
Genome assembly (visualization)
9
hg19
4
GRCh38
Lab
19
Kyle Gaulton, UCSD
6
Bing Ren, UCSD
6
Klaus Kaestner, Upenn
4
AMP-T2D consortium
4
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
award.rfa!
AMP
BIOSAMPLE
ASSAY
42 results
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Clear Filters
pCHi-C
snATAC-seq
WGBS
ChIP-seq
STARR-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
total RNA-seq
primary cell
pancreatic alpha cell
6
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
+ See 7 more…
cell line
EndoC_BH1
2
3
2
HepG2
2
2
HEK293T
2
tissue
kidney
4
pancreas
2
islet of Langerhans
1
thymus
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
See all biosamples
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