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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
total RNA-seq
152
single cell RNA-seq
124
ATAC-seq
71
snATAC-seq
54
ChIP-seq
41
WGBS
2
Hi-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
338
Transcription
195
DNA accessibility
54
DNA binding
41
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
41
histone
41
histone modification
26
broad histone mark
15
narrow histone mark
9
transcription factor
4
control
1
RNA binding protein
Date released
152
August, 2021
134
May, 2022
78
February, 2023
66
May, 2021
59
September, 2020
47
September, 2023
39
February, 2021
19
April, 2020
14
May, 2023
11
January, 2021
7
August, 2020
4
March, 2023
4
May, 2020
Available data
163
fastq
153
zippedFastqFolder
114
bed narrowPeak
92
bigWig
70
bam
64
xls
57
txt
41
tsv
38
tagAlign
2
hic
1
bedpe bed3+
1
vcf
Organism
629
Homo sapiens
Biosample type
391
primary cell
209
tissue
32
cell line
2
stem cell
Organ
185
kidney
148
pancreas
143
epithelium
27
liver
19
lung
6
blood
6
bodily fluid
Project
315
HPAP
166
AMP
83
T1D
47
KPMP
19
LungMap
4
community
Genome assembly (visualization)
155
GRCh38
84
hg19
Lab
315
Klaus Kaestner, Upenn
138
Katalin Susztak, Upenn
83
Kyle Gaulton, UCSD
47
KPMP
28
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
27
audit script error
1
inconsistent ontology term
award.rfa!
AMP
BIOSAMPLE
ASSAY
634 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
25
monocyte
28
38
pancreatic beta cell
11
16
16
exocrine cell
39
+ See 6 more…
tissue
kidney
49
58
75
2
1
lung
9
10
islet of Langerhans
3
pancreas
2
cell line
HepG2
9
16
1
1
EndoC-BH1
1
1
EndoC_BH1
2
Synthesized DNA
1
stem cell
SB Ad3.1
1
1
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