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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182total RNA-seq
  • 152single cell RNA-seq
  • 124ATAC-seq
  • 71snATAC-seq
  • 54ChIP-seq
  • 41WGBS
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 338Transcription
  • 195DNA accessibility
  • 54DNA binding
  • 41DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 41histone
  • 41histone modification
  • 26broad histone mark
  • 15narrow histone mark
  • 9transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 152August, 2021
  • 134May, 2022
  • 78February, 2023
  • 66May, 2021
  • 59September, 2020
  • 47September, 2023
  • 39February, 2021
  • 19April, 2020
  • 14May, 2023
  • 11January, 2021
  • 7August, 2020
  • 4March, 2023
  • 4May, 2020
Available data
  • 163fastq
  • 153zippedFastqFolder
  • 114bed narrowPeak
  • 92bigWig
  • 70bam
  • 64xls
  • 57txt
  • 41tsv
  • 38tagAlign
  • 2hic
  • 1bedpe bed3+
  • 1vcf
Organism
  • 629Homo sapiens
Biosample type
  • 391primary cell
  • 209tissue
  • 32cell line
  • 2stem cell
Organ
  • 185kidney
  • 148pancreas
  • 143epithelium
  • 27liver
  • 19lung
  • 6blood
  • 6bodily fluid
Project
  • 315HPAP
  • 166AMP
  • 83T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 155GRCh38
  • 84hg19
Lab
  • 315Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 83Kyle Gaulton, UCSD
  • 47KPMP
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 27audit script error
  • 1inconsistent ontology term
award.rfa!
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634 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell422925
monocyte2838
pancreatic beta cell111616
exocrine cell39
tissue
kidney49587521
lung910
islet of Langerhans3
pancreas2
cell line
HepG291611
EndoC-BH111
EndoC_BH12
Synthesized DNA1
stem cell
SB Ad3.111
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