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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 182total RNA-seq
  • 152single cell RNA-seq
  • 124ATAC-seq
  • 72snATAC-seq
  • 54ChIP-seq
  • 41WGBS
  • 2Hi-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 338Transcription
  • 196DNA accessibility
  • 54DNA binding
  • 41DNA methylation
  • 23D chromatin structure
  • 1DNA sequencing
Target of assay
  • 41histone
  • 41histone modification
  • 26broad histone mark
  • 15narrow histone mark
  • 9transcription factor
  • 4control
  • 1RNA binding protein
Date released
  • 152August, 2021
  • 134May, 2022
  • 78February, 2023
  • 66May, 2021
  • 59September, 2020
  • 47September, 2023
  • 39February, 2021
  • 19April, 2020
  • 14May, 2023
  • 11January, 2021
  • 7August, 2020
  • 4March, 2023
  • 4May, 2020
  • 1July, 2025
Available data
  • 163fastq
  • 153zippedFastqFolder
  • 114bed narrowPeak
  • 92bigWig
  • 70bam
  • 64xls
  • 57txt
  • 42tsv
  • 38tagAlign
  • 2hic
  • 1bed bed3+
  • 1bedpe bed3+
  • 1tbi
  • 1vcf
Organism
  • 629Homo sapiens
Biosample type
  • 391primary cell
  • 210tissue
  • 32cell line
  • 2stem cell
Organ
  • 185kidney
  • 148pancreas
  • 143epithelium
  • 27liver
  • 19lung
  • 6blood
  • 6bodily fluid
  • 1musculature of body
Project
  • 315HPAP
  • 167AMP
  • 83T1D
  • 47KPMP
  • 19LungMap
  • 4community
Genome assembly (visualization)
  • 156GRCh38
  • 84hg19
Lab
  • 315Klaus Kaestner, Upenn
  • 138Katalin Susztak, Upenn
  • 83Kyle Gaulton, UCSD
  • 47KPMP
  • 28Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 27audit script error
  • 1inconsistent ontology term
award.rfa!
  • AMP
BIOSAMPLE
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635 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
ChIP-seq
WGBS
Hi-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
STARR-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
Langerhans cell8548
pancreatic alpha cell422925
monocyte2838
pancreatic beta cell111616
exocrine cell39
tissue
kidney49587521
lung910
islet of Langerhans3
pancreas2
skeletal muscle tissue1
cell line
HepG291611
EndoC-BH111
EndoC_BH12
Synthesized DNA1
stem cell
SB Ad3.111
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