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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 256total RNA-seq
  • 152single cell RNA-seq
  • 142ATAC-seq
  • 105ChIP-seq
  • 83snATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 8Hi-C
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 412Transcription
  • 225DNA accessibility
  • 105DNA binding
  • 47DNA methylation
  • 83D chromatin structure
  • 1DNA sequencing
Target of assay
  • 91histone
  • 91histone modification
  • 46narrow histone mark
  • 45broad histone mark
  • 11transcription factor
  • 4control
  • RNA binding protein
Date released
  • 167August, 2021
  • 153May, 2021
  • 134May, 2022
  • 102February, 2023
  • 59September, 2020
  • 47September, 2023
  • 45February, 2021
  • 45May, 2020
  • 19April, 2020
  • 16January, 2021
  • 14May, 2023
  • 7August, 2020
  • 7March, 2020
  • 5March, 2023
  • 3October, 2022
  • 2March, 2019
  • 1July, 2025
  • 1October, 2017
Available data
  • 215bigWig
  • 186bam
  • 170fastq
  • 169bed narrowPeak
  • 153zippedFastqFolder
  • 115tsv
  • 84tagAlign
  • 64xls
  • 60txt
  • 7hic
  • 5bedpe bed3+
  • 3bed bed3+
  • 3bed bedgraph
  • 3cool
  • 1bed broadPeak
  • 1bedpe
  • 1tbi
  • 1vcf
Organism
  • 821Homo sapiens
Biosample type
  • 529primary cell
  • 245tissue
  • 44cell line
  • 7in vitro differentiated cells
  • 2stem cell
Organ
  • 191kidney
  • 191pancreas
  • 156epithelium
  • 30liver
  • 19lung
  • 8blood
  • 8bodily fluid
  • 5connective tissue
  • 1bone element
  • 1bone marrow
  • 1musculature of body
  • 1thymus
Project
  • 324HPAP
  • 244T1D
  • 188AMP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 275GRCh38
  • 214hg19
Lab
  • 324Klaus Kaestner, Upenn
  • 236Kyle Gaulton, UCSD
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 37Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 8AMP-T2D consortium
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Stephen Parker, UMich
  • 1ITG
Audit category:
  • 30audit script error
  • 11inconsistent ontology term
award.rfa!
  • AMP
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

827 results

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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
primary cell
monocyte53841
Langerhans cell8548
pancreatic alpha cell4229311
pancreatic beta cell1116161
exocrine cell39
tissue
kidney49587561
islet of Langerhans813262
lung910
pancreas4
skeletal muscle tissue1
cell line
HepG2917121
EndoC_BH12232
EndoC-BH111
HEK293T2
Synthesized DNA1
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
stem cell
SB Ad3.111
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