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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 360ChIP-seq
  • 5total RNA-seq
  • 2pCHi-C
  • 1ATAC-seq
  • 1Hi-C
  • 1WGBS
Assay category
  • 360DNA binding
  • 5Transcription
  • 13D chromatin structure
  • 1DNA accessibility
  • 1DNA methylation
Target of assay
  • 286transcription factor
  • 82recombinant protein
  • 56control
  • 53RNA binding protein
  • 20chromatin remodeller
  • 15histone
  • 15histone modification
  • 8broad histone mark
  • 7narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 315November, 2017
  • 46November, 2018
  • 5January, 2019
  • 2February, 2021
  • 1December, 2018
  • 1May, 2020
Available data
  • 367fastq
  • 366bam
  • 318bigWig
  • 294bed narrowPeak
  • 293bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 12tagAlign
  • 6tsv
  • 3tar
  • 1bed bed3
  • 1bed bed3+
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 370Homo sapiens
Biosample type
  • 370cell line
Organ
  • 370liver
Project
  • 370AMP
Genome assembly (visualization)
  • 315hg19
  • 268GRCh38
Lab
  • 370AMP-T2D consortium
Audit category:
  • 1inconsistent replicate
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

370 results

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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
cell line
HepG236052111
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