Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1831target gene predictions
  • 996accessible chromatin
  • 888histone modifications
  • 775binding sites
  • 734candidate regulatory elements
  • 527gene expression
  • 482differential activity
  • 433chromatin state
  • 92variant allelic effects
  • 51eQTL
  • 6caQTL
  • 5hQTL
  • 5sQTL
  • 3meQTL
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 1949February, 2021
  • 1320July, 2026
  • 1134September, 2022
  • 358May, 2021
  • 333November, 2021
  • 320May, 2026
  • 299February, 2024
  • 281September, 2023
  • 226June, 2020
  • 96October, 2022
  • 95May, 2020
  • 64March, 2023
  • 56January, 2021
  • 50January, 2022
  • 44August, 2021
  • 41May, 2022
  • 27January, 2020
  • 24March, 2020
  • 24November, 2022
  • 19April, 2020
  • 16August, 2017
  • 16February, 2020
  • 9August, 2018
  • 9October, 2019
  • 6February, 2023
  • 4November, 2019
  • 3November, 2020
  • 2January, 2025
  • 2March, 2024
  • 2May, 2024
  • 1July, 2020
  • 1June, 2021
Available data
  • 5378bed bed3+
  • 654tsv
  • 399bigWig
  • 383bed bed9
  • 83txt
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 9bigBed bed9
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 6785Homo sapiens
Collection Tags
  • 1661ChIP-Atlas
  • 1122EpiMap
  • 794ENCODE-rE2G
  • 465ENCODE
  • 464AMP
  • 393HDMA
  • 386DGA
  • 364T2DKP
  • 355T1D
  • 320pyxis
  • 281KPMP
  • 218BLUEPRINT
  • 1744DN
  • 133CATlas
  • 73 T2DKP
  • 55HPAP
  • 55T2D
  • 47CMDGA
  • 45eQTLCatalogue
  • 12ROADMAP
  • 2GTEx
Biosample type
  • tissue
  • 3760primary cell
  • 2559cell line
  • 507in vitro differentiated cells
  • 3stem cell
Organ
  • 839epithelium
  • 727blood
  • 409connective tissue
  • 365kidney
  • 331brain
  • 266skin of body
  • 214bodily fluid
  • 207lung
  • 194heart
  • 193pancreas
  • 180embryo
  • 168vasculature
  • 139liver
  • 116blood vessel
  • 102mammary gland
  • 86eye
  • 83bone element
  • 81intestine
  • 78uterus
  • 71prostate gland
  • 64large intestine
  • 62lymph node
  • 62penis
  • 60__MARKER__
  • 57adipose tissue
  • 55musculature of body
  • 52extraembryonic component
  • 49muscle organ
  • 41artery
  • 36thymus
  • 25adrenal gland
  • 24spleen
  • 23thyroid gland
  • 22vein
  • 21lymphatic vessel
  • 16bronchus
  • 15placenta
  • 13bone marrow
  • 12gonad
  • 11esophagus
  • 11stomach
  • 10pituitary gland
  • 9testis
  • 8limb
  • 8mouth
  • 7spinal cord
  • 6lymphoid tissue
  • 5skeleton
  • 5trachea
  • 4nose
  • 4small intestine
  • 2ovary
  • 2urinary bladder
  • 1pericardium
Project
  • 6125AMP
  • 333ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 13community
Genome assembly (visualization)
  • 4433hg19
  • 2427GRCh38
  • 1hg18
award.rfa!
  • AMP2
biosample_type!
  • tissue
BIOSAMPLE
TYPE

6831 results

search-icontable-tab-icon
Clear Filters
target gene predictions
accessible chromatin
histone modifications
binding sites
candidate regulatory elements
gene expression
differential activity
chromatin state
variant allelic effects
eQTL
caQTL
hQTL
sQTL
meQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte2188611544211
fibroblast283811062
endothelial cell17201252521
CD8-positive, alpha-beta T cell27430721
T-cell644
cell line
A549331122118
HeLa-S359153
H1-hESC39112181
K5623011277
MCF-71312395
in vitro differentiated cells
hematopoietic multipotent progenitor cell2211119110
neural progenitor cell61015574
adipocyte7411416
embryonic stem cell15115
mesenchymal stem cell411132
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego