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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 20Hi-C
Assay category
  • 203D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 3October, 2022
  • 2November, 2019
  • 1March, 2023
Available data
  • 3392bam
  • 3149bigWig
  • 1735bed narrowPeak
  • 1590tsv
  • 1357fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 321bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 153zippedFastqFolder
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 20Homo sapiens
Biosample type
  • 9tissue
  • 6primary cell
  • 4in vitro differentiated cells
  • 1cell line
Organ
  • 6epithelium
  • 6pancreas
  • 3blood vessel
  • 3heart
  • 3vasculature
  • 2musculature of body
  • 2vein
  • 1liver
Project
  • 16AMP
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 19hg19
  • 1GRCh38
Lab
  • 16AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
  • 1ITG
Audit category:
  • 5inconsistent ontology term
  • 4audit script error
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

20 results

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Hi-C
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
primary cell
endothelial cell of umbilical vein2
chondrocytes1
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
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