Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2638pQTL
  • 1620candidate regulatory elements
  • 1322target gene predictions
  • 976histone modifications
  • 920chromatin state
  • 855accessible chromatin
  • 811binding sites
  • 630gene expression
  • 484differential activity
  • 164eQTL
  • 139variant allelic effects
  • 74Fine-mapped variants
  • 8caQTL
  • 7sQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2554February, 2021
  • 2442September, 2022
  • 387May, 2021
  • 324November, 2021
  • 320May, 2026
  • 318February, 2024
  • 286June, 2020
  • 281September, 2023
  • 155May, 2020
  • 127March, 2020
  • 105January, 2022
  • 96October, 2022
  • 89January, 2020
  • 82August, 2021
  • 70March, 2023
  • 64February, 2020
  • 56January, 2021
  • 43May, 2022
  • 41November, 2022
  • 34August, 2017
  • 32February, 2023
  • 28March, 2024
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 4March, 2026
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 2January, 2025
  • 2May, 2024
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5883bed bed3+
  • 3487tsv
  • 846bed bed9
  • 507bigWig
  • 87txt
  • 40bigBed bed9
  • 34bed bed9+
  • 26csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 10616Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2430EpiMap
  • 1844ChIP-Atlas
  • 932ENCODE
  • 524DGA
  • 504AMP
  • 420T1D
  • 397T2DKP
  • 320pyxis
  • 281KPMP
  • 219BLUEPRINT
  • 1744DN
  • 149GTEx
  • 141 T2DKP
  • 110T2D
  • 100eQTLCatalogue
  • 97CMDGA
  • 67HPAP
  • 12ROADMAP
Biosample type
  • 5164tissue
  • 2680primary cell
  • 2352cell line
  • 463in vitro differentiated cells
  • 3stem cell
Organ
  • 2888vasculature
  • 2853bodily fluid
  • 2842blood
  • 2834blood vessel
  • 2658vein
  • 900epithelium
  • 634kidney
  • 500connective tissue
  • 482brain
  • 369heart
  • 360musculature of body
  • 311lung
  • 301pancreas
  • 289intestine
  • 244limb
  • 215embryo
  • 204skin of body
  • 174large intestine
  • 161liver
  • 146extraembryonic component
  • 138adipose tissue
  • stomach
  • 109eye
  • 89bone element
  • 87mammary gland
  • 84small intestine
  • 83artery
  • 83uterus
  • 78prostate gland
  • 73adrenal gland
  • 73placenta
  • 64penis
  • 64ureter
  • 62lymph node
  • 60__MARKER__
  • 50gonad
  • 49thymus
  • 45esophagus
  • 43spinal cord
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphoid tissue
  • 23ovary
  • 23thyroid gland
  • 21lymphatic vessel
  • 19mouth
  • 18skeleton
  • 16bronchus
  • 13bone marrow
  • 13breast
  • 13pituitary gland
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 9958AMP
  • 324ENCODE
  • 281KPMP
  • 60T1D
  • 19LungMap
  • 17community
  • 5ITG
Genome assembly (visualization)
  • 6767hg19
  • 1801GRCh38
  • 4hg18
award.rfa!
  • AMP2
organ_slims!
  • stomach
BIOSAMPLE
TYPE

10664 results

search-icontable-tab-icon
Clear Filters
pQTL
candidate regulatory elements
target gene predictions
histone modifications
chromatin state
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
sQTL
hQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart372012151412
brain291631821121
lung33171611
muscle of arm33161611
primary cell
monocyte2861811544121
endothelial cell7112252521
common myeloid progenitor, CD34-positive271413
B cell141086213
CD8-positive, alpha-beta T cell7530142
cell line
HeLa-S355531
A549211911812
H1-hESC13911128
K5627231712
MCF-7962513
in vitro differentiated cells
neural progenitor cell55154107
hematopoietic multipotent progenitor cell1910110111
adipocyte4616411
embryonic stem cell11551
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego