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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 81DNase-seq
  • 53single cell RNA-seq
  • 52ChIP-seq
  • 11total RNA-seq
  • 4RRBS
  • 3snDrop-seq
  • 2RNA microarray
  • 2pCHi-C
  • 1FAIRE-seq
  • 1small RNA-seq
Assay category
  • 82DNA accessibility
  • 65Transcription
  • 52DNA binding
  • 4DNA methylation
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 12control
  • 10transcription factor
  • 7recombinant protein
  • 3RNA binding protein
Date released
  • 81June, 2019
  • 47September, 2023
  • 30October, 2019
  • 23April, 2019
  • 11July, 2019
  • 8February, 2021
  • 5May, 2019
  • 3December, 2019
  • 2March, 2020
Available data
  • 144bam
  • 131bigWig
  • 119bed narrowPeak
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 24tsv
  • 5csv
  • 5txt
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 210Homo sapiens
Biosample type
  • 157tissue
  • 36primary cell
  • 17cell line
Organ
  • 941pancreas
  • 760liver
  • 680connective tissue
  • 524epithelium
  • 491adipose tissue
  • 393heart
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 210kidney
  • 159bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 163AMP
  • 47KPMP
Genome assembly (visualization)
  • 130GRCh38
  • 128hg19
Lab
  • 163AMP-T2D consortium
  • 47KPMP
Audit category:
  • 23inconsistent ontology term
  • 7audit script error
award.rfa!
  • AMP2
BIOSAMPLE
ASSAY

210 results

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Clear Filters
DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RRBS
snDrop-seq
RNA microarray
pCHi-C
FAIRE-seq
small RNA-seq
tissue
kidney13532711
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
primary cell
epithelial cell of proximal tubule11011
kidney epithelial cell1511
kidney tubule cell31
kidney glomerular epithelial cell21
renal cortical epithelial cell111
cell line
RCC 7860 HIF1a re-expression41
RCC 7860 vector311
RCC 7860 HIF2a over-expression31
glomerular visceral epithelial cell11
RCC 7860 VHL1
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