Experiment Matrix

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BIOSAMPLE

	ASSAY
4402 results Clear Filters	ChIP-seq	total RNA-seq	ATAC-seq	single cell RNA-seq	DNase-seq	RNA microarray	WGBS	snATAC-seq	pCHi-C	Hi-C	RRBS	small RNA-seq	MeRIP-seq	GRO-seq	STARR-seq	Capture-C	FAIRE-seq	snDrop-seq	CRISPR RNA-seq	CRISPR genome editing followed by sgRNA sequencing	...and 6 more
tissue
islet of Langerhans	69	285	56	6	1			1	4	3	1		4				1
adipose tissue	2	382	3				3		1
liver	145	167	20	1	2		3		1	1	1	1
kidney	27	49	75	64	13			6		1	1						1
bone element						84
heart left ventricle	35	3	2	18	3		4		1	1	1
left cardiac atrium	40			18	1
bone tissue		58
body of pancreas	35	3	4		4		2					2
coronary artery	5	1	36		2
tibial nerve	35	5	1		2
heart	14	4		1	18		1			1		1
subcutaneous abdominal adipose tissue	36						3
heart right ventricle	13	1		17	1		2		1	1
skeletal muscle tissue	22	1	1	1				2			4	1
tibial artery	23	1	1		2
pancreas	16	2			2		2		1	1	1						1
right cardiac atrium	6			18			1		1
spleen	20		1		1		2		1
aorta	13	1		4			2		1	1
subcutaneous adipose tissue	12	7	1			1						1
muscle of leg	7				13		1
retina		3	15		3
lung				9				10	1
omental fat pad	11	5	1		2							1
ascending aorta	16	2			1
right lobe of liver	10	3	1		2		1					2
thoracic aorta	16	2	1
muscle of arm					17
endocrine pancreas	16
right atrium auricular region	10	3	1		2
pigmented layer of retina		2	12
germinal matrix	12
white adipose tissue	12
renal cortex interstitium					11
renal pelvis					10
right kidney					10
left kidney					9
gastrocnemius medialis		1								4
psoas muscle		2							1	2
aortic valve				4
left renal cortex interstitium					4
left renal pelvis					4
pulmonary valve				4
right renal pelvis					4
tricuspid valve				4
cardiac atrium		1		2
cardiac ventricle		1		2
middle temporal gyrus	3
mitral valve				3
occipital lobe		1			1							1
right renal cortex interstitium					3
visceral abdominal adipose tissue		3
acetabular part of hip bone		1	1
gyrus rectus	2
ilium		1	1
interventricular septum				2
ischium		1	1
metanephros		1										1
parietal lobe		1										1
precuneus cortex	2
pubis		1	1
pulmonary artery				2
supramarginal gyrus	2
white matter	2
C1 segment of cervical spinal cord		1
adipose tissue(adipose white tissue)			1
adrenal gland									1
bladder (urinary bladder)									1
cuneus	1
distal epiphysis			1
distal epiphysis of femur			1
distal epiphysis of humerus			1
distal epiphysis of tibia			1
esophagus									1
forelimb muscle					1
gastric (mucosa of stomach)									1
hindlimb muscle					1
inferior temporal gyrus	1
kidney (Cortex-Medulla)																		1
kidney (cortex)																		1
kidney (medulla)																		1
kidney interstitium						1
left ventricle myocardium		1
lingual gyrus	1
orbital gyrus	1
ovary									1
paraterminal gyrus	1
pericardium											1
postcentral gyrus	1
proximal epiphysis			1
proximal epiphysis of femur			1
proximal epiphysis of humerus			1
proximal epiphysis of tibia			1
renal glomerulus						1
sigmoid colon									1
small intestine									1
superior occipital gyrus	1
superior temporal gyrus					1
thymus									1
primary cell
pancreatic alpha cell	13	52	35	12			31			1
Langerhans cell				85				48
pancreatic beta cell	13	21	23	12			16			1
exocrine cell		39
CD8-positive, alpha-beta T cell	33	2	2
pancreatic acinar cell	8	4	9	12						1
pancreatic ductal cell	13	4	4	10
naive thymus-derived CD4-positive, alpha-beta T cell	2	1	22
pancreatic endocrine cell	23
CD4-positive, alpha-beta memory T cell			22
endothelial cell of umbilical vein	17				2					2							1
skeletal muscle myoblast	15	1			2						1
monocyte	1	1	15
epithelial cell of proximal tubule	10	1			1						1
hepatocyte	4	5			1						1
macrophage			11
pancreatic delta cell				11
skeletal muscle satellite cell	8	1										1
cardiac fibroblast	5				3						1
osteoblast		5	2		1				1
pancreatic cell				9
pancreatic polypeptide-secreting cell				9
kidney epithelial cell	5	1			1						1
mesenchymal stem cell	7
mesenchymal cell				6
cardiac muscle cell	3				1						1
retinal pigment epithelial cell	3				1						1
kidney tubule cell		1			3
pancreatic stellate cell				4
skeletal muscle cell	2				1						1
gabaergic neuron			3
glutamatergic neuron			3
kidney glomerular epithelial cell		1			2
microglial cell/astrocyte			3
oligodendrocyte			3
renal cortical epithelial cell		1			1						1
B cell			2
T follicular helper cell			2
T-helper 1 cell			2
T-helper 17 cell			2
T-helper 2 cell			2
central memory CD8-positive, alpha-beta T cell			2
co-expressing pancreatic endocrine cell				2
effector CD4-positive, alpha-beta T cell			2
effector T cell			2
effector memory CD8-positive, alpha-beta T cell			2
endothelial cell				2
enteroendocrine cell				2
gamma-delta T cell			2
glomerular endothelial cell		1			1
glomerular visceral epithelial cell					2
mast cell				2
mature natural killer cell			2
memory B cell			2
memory T cell			2
memory regulatory T cell			2
mesenchymal stem cell of adipose		1										1
naive B cel			2
naive regulatory T cell			2
naive thymus-derived CD8-positive, alpha-beta T cell			2
neutrophil	1	1
pancreatic epsilon cell				2
regulatory T cell			2
unclassified exocrine cell				2
unclassified pancreatic endocrine cell				2
Heart fetal (cardiac muscle cell)			1
Liver fetal (hepatocyte)			1
cardiac atrium fibroblast		1
cardiac ventricle fibroblast		1
chondrocytes										1
embryonic stem cell		1
endothelial cell of coronary artery		1
endothelial cell of hepatic sinusoid										1
hepatic stellate cell					1
immature natural killer cell			1
kidney capillary endothelial cell					1
mesangial cell		1
myeloid dendritic cell			1
natural killer cell			1
pericardium fibroblast		1
plasma cell			1
plasmacytoid dendritic cell			1
smooth muscle cell of the brain vasculature					1
smooth muscle cell of the coronary artery		1
cell line
HepG2	378	14	1				1		2	2					2
EndoC_BH1	13	31	19							1			6			2				1
smooth muscle cell of the coronary artery	6	52	8
GM12878	60		1
Panc1	13				1					1
H1-hESC		8
RCC 7860 HIF1a re-expression	4	1
RCC 7860 vector	3	1							1
RCC 7860 HIF2a over-expression	3	1
EndoC-BH1
HEK293T															2
early embryonic cell		2
glomerular visceral epithelial cell		1			1
iPSC derived cell line	2
MCF-7									1
MIN6
RCC 7860 VHL									1
Synthesized DNA															1
fibroblast cell line									1
in vitro differentiated cells
adipocyte	67	5	8		1											1
cardiomyocytes	3	59
embryonic stem cell	40	7	6						1
neural progenitor cell	21	7	10
pancreatic endoderm	18	4												1
cardiac precursors (cardiac muscle cell)		19	1							1
hepatocyte	15
definitive endodermal cell	8	2												1
primitive gut cell	8	2												1
cardiomyocytes (cardiac muscle cell)		3	1	2					2	2
induced pluripotent stem cell		9
Posterior foregut	5													1
Pancreatic progenitors (progenitor cell of endocrine pancreas)			5
chondrocyte			5
endocrine cell	3	2
posterior foregut	3	2
Hepatic endoderm	4
immature adipocyte		2	2
lymphocyte of B lineage (iPSC)		1							1	1
pancreatic PP cell	3
osteoblast			1													1
preadipocyte		1	1
Progenitor cell of Hypothalamus (neural progenitor cell)			1
cardiac fibroblast		1
endothelial cell		1
hematopoietic multipotent progenitor cell		1
intermediate cardiomyocytes		1
intermediate endothelial cell		1
intermediate smooth muscle cell		1
islet precursor cell		1
mesodermal cell (lineage marker-negative)		1
mesodermal cell (pacemaker intermediate)		1
neuron cell of Hypothalamus (neuron)			1
smooth muscle cell		1
stem cell		1
white fat cell									1
stem cell
hESC	3													1
SB Ad3.1																			1
mesenchymal stem cell									1
mesendoderm									1
neural progenitor cell (neural stem cell)									1
trophoblast									1

Experiment Matrix

Assay

Assay category

Target of assay

Date released

Available data

Organism

Biosample type

Organ

Project

Genome assembly (visualization)

Lab

Audit category:

Audit category:

Audit category:

award.rfa!

organ_slims!

4402 results