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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 388total RNA-seq
  • 214ChIP-seq
  • 141ATAC-seq
  • 80single cell RNA-seq
  • 51WGBS
  • 10MeRIP-seq
  • 9Hi-C
  • 8DNase-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 470Transcription
  • 214DNA binding
  • 152DNA accessibility
  • 53DNA methylation
  • 93D chromatin structure
Target of assay
  • 147histone
  • 147histone modification
  • 78broad histone mark
  • 69narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 104May, 2022
  • 72September, 2018
  • 60May, 2021
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 38February, 2023
  • 32February, 2021
  • 19September, 2020
  • 18October, 2019
  • 11September, 2017
  • 10November, 2020
  • 7August, 2020
  • 7March, 2020
  • 7November, 2018
  • 6July, 2019
  • 5March, 2019
  • 5October, 2017
  • 4August, 2021
  • 4June, 2019
  • 3August, 2018
  • 3October, 2022
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1June, 2018
Available data
  • 683bam
  • 617bigWig
  • 471fastq
  • 415tsv
  • 210bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 904Homo sapiens
Biosample type
  • 475tissue
  • 346primary cell
  • 88cell line
  • 3in vitro differentiated cells
Organ
  • 912pancreas
  • 791liver
  • 683connective tissue
  • 520epithelium
  • 491adipose tissue
  • 393heart
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 760AMP
  • 152HPAP
Genome assembly (visualization)
  • 652hg19
  • 629GRCh38
Lab
  • 717AMP-T2D consortium
  • 152Klaus Kaestner, Upenn
  • 25Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 77inconsistent ontology term
  • 4audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
award.rfa!
  • T1D
BIOSAMPLE
ASSAY

912 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
MeRIP-seq
Hi-C
DNase-seq
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans27148476431111
body of pancreas3354242
pancreas216212111
endocrine pancreas16
primary cell
pancreatic alpha cell52133512311
pancreatic beta cell21132312161
pancreatic acinar cell489121
pancreatic ductal cell413410
pancreatic endocrine cell23
cell line
EndoC_BH13113196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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