Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2874target gene predictions
  • 2636pQTL
  • 1671candidate regulatory elements
  • 977histone modifications
  • 944chromatin state
  • 916accessible chromatin
  • 811binding sites
  • 458gene expression
  • 363differential activity
  • 160eQTL
  • 140variant allelic effects
  • 74Fine-mapped variants
  • 6caQTL
  • 5hQTL
  • 5sQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2583February, 2021
  • 2511September, 2022
  • 1984July, 2026
  • 389May, 2021
  • 320May, 2026
  • 319February, 2024
  • 289June, 2020
  • 155May, 2020
  • 127March, 2020
  • 106January, 2022
  • 94October, 2022
  • 89January, 2020
  • 77August, 2021
  • 64February, 2020
  • 61March, 2023
  • 43May, 2022
  • 41November, 2022
  • 35August, 2017
  • 31February, 2023
  • 30March, 2024
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 7548bed bed3+
  • 3205tsv
  • 869bed bed9
  • 243bigWig
  • 83txt
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 12004Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1848ChIP-Atlas
  • 1458ENCODE-rE2G
  • 960ENCODE
  • 527DGA
  • 393HDMA
  • 362T1D
  • 320pyxis
  • 219BLUEPRINT
  • 1744DN
  • 174AMP
  • 151GTEx
  • 133CATlas
  • 113 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 88CMDGA
  • 68T2DKP
  • 67HPAP
  • 12ROADMAP
Biosample type
  • 5927tissue
  • 3064primary cell
  • 2549cell line
  • 507in vitro differentiated cells
  • 3stem cell
Organ
  • 3365blood
  • 2853bodily fluid
  • 2842vasculature
  • 2820blood vessel
  • 2659vein
  • 900brain
  • 589epithelium
  • 577kidney
  • 450heart
  • 428lung
  • 427connective tissue
  • 349musculature of body
  • 339intestine
  • 286skin of body
  • 279pancreas
  • 244limb
  • 220large intestine
  • 213embryo
  • 199liver
  • 171extraembryonic component
  • 157eye
  • 142adipose tissue
  • 131stomach
  • 111muscle organ
  • 101bone element
  • 98mammary gland
  • 95placenta
  • 93small intestine
  • 92adrenal gland
  • 92thymus
  • 91uterus
  • 87prostate gland
  • 83artery
  • 73ureter
  • 64penis
  • 63spleen
  • 62gonad
  • 62lymph node
  • 60__MARKER__
  • 49spinal cord
  • 45thyroid gland
  • 44esophagus
  • 31testis
  • 30ovary
  • 25nerve
  • 24lymphoid tissue
  • 22skeleton
  • 21mouth
  • 15breast
  • 13bronchus
  • 13pituitary gland
  • 13urinary bladder
  • 12lymphatic vessel
  • 12tongue
  • 12vagina
  • 10bone marrow
  • 5trachea
  • 4nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 12051AMP
Genome assembly (visualization)
  • 6468hg19
  • 3482GRCh38
  • 4hg18
biosample_term_name!
  • RCC 7860 HIF2a over-expression
BIOSAMPLE
TYPE

12051 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
histone modifications
chromatin state
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
heart38371215132
stomach4240119311
brain302931821121
head of caudate nucleus86
primary cell
monocyte1861711544211
T-cell644
CD8-positive, alpha-beta T cell25730122
fibroblast242411026
common myeloid progenitor, CD34-positive262713
cell line
A549332111812
HeLa-S359531
H1-hESC39111128
K5623071712
MCF-71392513
in vitro differentiated cells
hematopoietic multipotent progenitor cell2219110111
neural progenitor cell65154107
adipocyte7416411
embryonic stem cell11551
mesenchymal stem cell431211
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego