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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1301ChIP-seq
  • 1169total RNA-seq
  • 360ATAC-seq
  • 217single cell RNA-seq
  • 210DNase-seq
  • 87RNA microarray
  • 34pCHi-C
  • 27WGBS
  • 23Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2snATAC-seq
  • 1DNAme array
Assay category
  • 1404Transcription
  • 1301DNA binding
  • 577DNA accessibility
  • 49DNA methylation
  • 233D chromatin structure
Target of assay
  • 893histone modification
  • 892histone
  • 453narrow histone mark
  • 438broad histone mark
  • 260control
  • 153transcription factor
  • 49RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
Date released
  • 574February, 2021
  • 411August, 2017
  • 295May, 2020
  • 284October, 2019
  • 226May, 2021
  • 218June, 2019
  • 168July, 2018
  • 141August, 2021
  • 120May, 2019
  • 108July, 2019
  • 102February, 2023
  • 94December, 2017
  • 91November, 2017
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 49April, 2018
  • 49March, 2020
  • 45November, 2019
  • 40May, 2024
  • 39February, 2018
  • 27November, 2018
  • 25February, 2020
  • 22October, 2017
  • 11September, 2017
  • 10December, 2019
  • 10November, 2020
  • 7December, 2018
  • 7January, 2018
  • 7January, 2019
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
Available data
  • 2628bam
  • 2449bigWig
  • 1378tsv
  • 1259bed narrowPeak
  • 761fastq
  • 687bigBed narrowPeak
  • 294tagAlign
  • 268bed bed3+
  • 262bed broadPeak
  • 226bigBed broadPeak
  • 100txt
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 17bedpe bed3+
  • 15hic
  • 11bed bed3
  • 8csv
  • 4bed bedgraph
  • 4hdf5
  • 2ibed
  • 1tagAlign bed3+
  • 1tar
Organism
  • 3479Homo sapiens
Biosample type
  • 2533tissue
  • cell line
  • 559primary cell
  • 387in vitro differentiated cells
  • 8stem cell
Organ
  • 679connective tissue
  • 667pancreas
  • 491adipose tissue
  • 390liver
  • 327heart
  • 293epithelium
  • 286brain
  • 170vasculature
  • 164blood vessel
  • 158bone element
  • 146kidney
  • 122limb
  • 96musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 29embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3487AMP
Genome assembly (visualization)
  • 2487hg19
  • 2393GRCh38
  • 5hg18
Lab
  • 3293AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 255inconsistent ontology term
  • 27inconsistent control
  • 12audit script error
Audit category:
  • 76missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

3487 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
snATAC-seq
DNAme array
tissue
islet of Langerhans692845561411141
adipose tissue2382313
liver145167201213111
bone element84
heart left ventricle35321831411
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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