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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1567ChIP-seq
  • 1135total RNA-seq
  • 352ATAC-seq
  • 215single cell RNA-seq
  • 211DNase-seq
  • 87RNA microarray
  • 35pCHi-C
  • 28WGBS
  • 22Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1GRO-seq
  • 1MPRA
Assay category
  • 1567DNA binding
  • 1368Transcription
  • 570DNA accessibility
  • 50DNA methylation
  • 223D chromatin structure
Target of assay
  • 814histone modification
  • 813histone
  • 454transcription factor
  • 413narrow histone mark
  • 400broad histone mark
  • 302control
  • 102RNA binding protein
  • 89recombinant protein
  • 33chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 644February, 2021
  • 406November, 2017
  • 343August, 2017
  • 306October, 2019
  • 296May, 2020
  • 218June, 2019
  • 168July, 2018
  • 120May, 2019
  • 114May, 2021
  • 113August, 2021
  • 108July, 2019
  • 90February, 2023
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 56November, 2019
  • 51December, 2017
  • 49April, 2018
  • 49March, 2020
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 8December, 2019
  • 4January, 2018
  • 3August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2915bam
  • 2699bigWig
  • 1519bed narrowPeak
  • 1355tsv
  • 1047fastq
  • 1025bigBed narrowPeak
  • 320bed broadPeak
  • 284bigBed broadPeak
  • 274tagAlign
  • 248bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 12hic
  • 11bedpe bed3+
  • 8csv
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 1tagAlign bed3+
Organism
  • 3707Homo sapiens
Biosample type
  • 2533tissue
  • 617cell line
  • 559primary cell
  • in vitro differentiated cells
  • 8stem cell
Organ
  • 752pancreas
  • 745liver
  • 586connective tissue
  • 490adipose tissue
  • 392heart
  • 344epithelium
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 8embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3717AMP
Genome assembly (visualization)
  • 2708hg19
  • 2588GRCh38
  • 1hg18
Lab
  • 3564AMP-T2D consortium
  • 60Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 228inconsistent ontology term
  • 28inconsistent control
  • 10audit script error
  • 1inconsistent replicate
Audit category:
  • 83missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

3717 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
GRO-seq
MPRA
tissue
islet of Langerhans692845561411411
adipose tissue2382313
liver145167201213111
bone element84
heart left ventricle35321831411
cell line
HepG236051211
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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