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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1570ChIP-seq
  • 1212total RNA-seq
  • 238ATAC-seq
  • 181DNase-seq
  • 115single cell RNA-seq
  • 87RNA microarray
  • 39pCHi-C
  • 28WGBS
  • 20Hi-C
  • 16small RNA-seq
  • 11RRBS
  • 10MeRIP-seq
  • 5GRO-seq
  • 4FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
Assay category
  • 1570DNA binding
  • 1343Transcription
  • 425DNA accessibility
  • 39DNA methylation
  • 203D chromatin structure
Target of assay
  • 773histone modification
  • 772histone
  • 493transcription factor
  • 393narrow histone mark
  • 378broad histone mark
  • 304control
  • 103RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 667February, 2021
  • 397November, 2017
  • 352August, 2017
  • 280October, 2019
  • 194May, 2020
  • 191May, 2021
  • 163June, 2019
  • 147August, 2021
  • 120July, 2018
  • 115May, 2019
  • 94December, 2017
  • 91February, 2023
  • 87November, 2018
  • 80April, 2019
  • 77July, 2019
  • 74October, 2018
  • 66May, 2022
  • 61November, 2019
  • 56March, 2020
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 10November, 2020
  • 8January, 2018
  • 6April, 2018
  • 6September, 2017
  • 5December, 2019
  • 3March, 2019
  • 1August, 2018
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2777bam
  • 2530bigWig
  • 1436bed narrowPeak
  • 1318tsv
  • 948fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 272bed broadPeak
  • 236bigBed broadPeak
  • 234bed bed3+
  • 101txt
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 17bedpe bed3+
  • 14hic
  • 11bed bed3
  • 6csv
  • 4bed bedgraph
  • 3tar
  • 2ibed
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 3535Homo sapiens
Biosample type
  • 2533tissue
  • 617cell line
  • primary cell
  • 387in vitro differentiated cells
  • 8stem cell
Organ
  • 746liver
  • 641connective tissue
  • 561pancreas
  • 489adipose tissue
  • 380heart
  • 265brain
  • 199blood vessel
  • 199vasculature
  • 158bone element
  • 139artery
  • 127kidney
  • 122limb
  • 114epithelium
  • 82musculature of body
  • 61blood
  • 61bodily fluid
  • 56eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3545AMP
Genome assembly (visualization)
  • 2553hg19
  • 2508GRCh38
  • 5hg18
Lab
  • 3380AMP-T2D consortium
  • 72Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 293inconsistent ontology term
  • 28inconsistent control
  • 11audit script error
  • 1inconsistent replicate
Audit category:
  • 45missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

3545 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
GRO-seq
FAIRE-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
tissue
islet of Langerhans692845516411411
adipose tissue2382313
liver145167202113111
bone element84
heart left ventricle35323181411
cell line
HepG236051211
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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