Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 888histone modifications
  • 775binding sites
  • 734candidate regulatory elements
  • 695target gene predictions
  • 433chromatin state
  • 403accessible chromatin
  • 356gene expression
  • 91variant allelic effects
  • 53eQTL
  • 43differential activity
  • 5hQTL
  • 4caQTL
  • 3meQTL
  • 3sQTL
  • 2Fine-mapped variants
  • 2other
  • 1representative DNase hypersensitivity sites
Date released
  • 1949February, 2021
  • 1134September, 2022
  • 358May, 2021
  • 298February, 2024
  • 226June, 2020
  • 95May, 2020
  • 94October, 2022
  • 55March, 2023
  • 50January, 2022
  • 44August, 2021
  • 41May, 2022
  • 27January, 2020
  • 24March, 2020
  • 24November, 2022
  • 16August, 2017
  • 16February, 2020
  • 9August, 2018
  • 9October, 2019
  • 6March, 2025
  • 5February, 2023
  • 4November, 2019
  • 3November, 2020
  • 2March, 2024
  • 1July, 2020
  • 1June, 2021
Available data
  • 3646bed bed3+
  • 383bed bed9
  • 377tsv
  • 130bigWig
  • 83txt
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 9bigBed bed9
  • 3bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 4446Homo sapiens
Collection Tags
  • 1661ChIP-Atlas
  • 1122EpiMap
  • 465ENCODE
  • 385DGA
  • 296T1D
  • 218BLUEPRINT
  • 1744DN
  • 130AMP
  • 55HPAP
  • 55T2D
  • 45 T2DKP
  • 45eQTLCatalogue
  • 38CMDGA
  • 31T2DKP
  • 12ROADMAP
  • 6STARNET
  • 2GTEx
Biosample type
  • tissue
  • 2343cell line
  • 1681primary cell
  • 463in vitro differentiated cells
  • 3stem cell
Organ
  • 528epithelium
  • 282connective tissue
  • 214bodily fluid
  • 204blood
  • 188kidney
  • 178embryo
  • 169skin of body
  • 124vasculature
  • 123pancreas
  • 118lung
  • 114brain
  • 81blood vessel
  • 79mammary gland
  • 69liver
  • 68uterus
  • 64bone element
  • 63prostate gland
  • 62lymph node
  • 62penis
  • 45extraembryonic component
  • 44musculature of body
  • 38intestine
  • 35eye
  • 34large intestine
  • 31heart
  • 28artery
  • 22vein
  • 13bronchus
  • 12lymphatic vessel
  • 11placenta
  • 10bone marrow
  • 10pituitary gland
  • 9gonad
  • 8limb
  • 8mouth
  • 8testis
  • 7spinal cord
  • 6esophagus
  • 6lymphoid tissue
  • 5adipose tissue
  • 5trachea
  • 4nose
  • 2stomach
  • 1adrenal gland
  • 1pericardium
  • 1thyroid gland
Project
  • 4491AMP
Genome assembly (visualization)
  • 4023hg19
  • 771GRCh38
  • 1hg18
biosample_type!
  • tissue
BIOSAMPLE
TYPE

4491 results

search-icontable-tab-icon
Clear Filters
histone modifications
binding sites
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
variant allelic effects
eQTL
differential activity
hQTL
caQTL
meQTL
sQTL
Fine-mapped variants
other
representative DNase hypersensitivity sites
cell line
HeLa-S315553
A549122119181
H1-hESC12139118
K5621272371
MCF-7239651
primary cell
monocyte861117154211
common myeloid progenitor, CD34-positive271413
CD8-positive, alpha-beta T cell3073122
B cell1410822
CD4-positive, alpha-beta memory T cell1499
in vitro differentiated cells
neural progenitor cell15554107
hematopoietic multipotent progenitor cell1119101011
adipocyte1146641
embryonic stem cell11155
cardiomyocytes11
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego