Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 860ChIP-seq
  • 297total RNA-seq
  • 217ATAC-seq
  • 104single cell RNA-seq
  • 34DNase-seq
  • 16pCHi-C
  • 13Hi-C
  • 10RRBS
  • 6MeRIP-seq
  • 5GRO-seq
  • 2Capture-C
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1FAIRE-seq
  • 1MPRA
  • 1WGBS
Assay category
  • 860DNA binding
  • 403Transcription
  • 252DNA accessibility
  • 133D chromatin structure
  • 12DNA methylation
Target of assay
  • 409transcription factor
  • 300histone
  • 300histone modification
  • 153broad histone mark
  • 152control
  • 146narrow histone mark
  • 89recombinant protein
  • 85RNA binding protein
  • 34chromatin remodeller
  • 3nucleotide modification
  • 2other context
  • 2other post-translational modification
Date released
  • 324November, 2017
  • 207May, 2021
  • 127August, 2017
  • 125February, 2021
  • 103May, 2020
  • 73September, 2018
  • 72October, 2019
  • 62November, 2018
  • 55June, 2019
  • 52August, 2021
  • 48July, 2018
  • 46December, 2017
  • 43April, 2018
  • 39February, 2018
  • 31July, 2019
  • 28December, 2018
  • 26February, 2023
  • 23January, 2019
  • 21March, 2020
  • 21November, 2019
  • 12November, 2020
  • 7December, 2019
  • 6January, 2018
  • 5May, 2019
  • 5September, 2017
  • 4August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1October, 2022
Available data
  • 1301bam
  • 1184bigWig
  • 812fastq
  • 729bed narrowPeak
  • 481bigBed narrowPeak
  • 411tsv
  • 109bed broadPeak
  • 109bigBed broadPeak
  • 76tagAlign
  • 66bed bed3+
  • 11bed bedMethyl
  • 11bigBed bedMethyl
  • 9bedpe bed3+
  • 7bed bed3
  • 7hic
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2csv
  • 2ibed
  • 1txt
Organism
  • 1569Homo sapiens
Biosample type
  • tissue
  • 617cell line
  • 559primary cell
  • 387in vitro differentiated cells
  • 8stem cell
Organ
  • 399liver
  • 353epithelium
  • 285pancreas
  • 132connective tissue
  • 103vasculature
  • 97blood vessel
  • 80heart
  • 68artery
  • 61blood
  • 61bodily fluid
  • 53kidney
  • 37embryo
  • 22vein
  • 21brain
  • 14musculature of body
  • 5eye
  • 3adipose tissue
  • 1mammary gland
  • 1pericardium
Project
  • 1571AMP
Genome assembly (visualization)
  • 1249hg19
  • 1073GRCh38
  • 5hg18
Lab
  • 1483AMP-T2D consortium
  • 82Kyle Gaulton, UCSD
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 251inconsistent ontology term
  • 3audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 63missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1571 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
GRO-seq
Capture-C
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
FAIRE-seq
MPRA
WGBS
cell line
HepG236051211
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego