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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
974
total RNA-seq
905
ChIP-seq
178
DNase-seq
172
ATAC-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1103
Transcription
905
DNA binding
356
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
626
histone modification
625
histone
322
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
November, 2020
3
December, 2019
3
March, 2019
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1905
bam
1769
bigWig
1075
tsv
918
bed narrowPeak
561
bigBed narrowPeak
376
fastq
238
tagAlign
212
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
100
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2525
Homo sapiens
Biosample type
2533
tissue
617
cell line
559
primary cell
387
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
470
pancreas
361
liver
313
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
110
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2533
AMP
Genome assembly (visualization)
1780
GRCh38
1749
hg19
Lab
2421
AMP-T2D consortium
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
2533 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
284
69
1
55
6
4
1
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
2
20
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
3
2
18
4
1
1
1
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