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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 275ChIP-seq
  • 214ATAC-seq
  • 111single cell RNA-seq
  • 87RNA microarray
  • 87total RNA-seq
  • 39pCHi-C
  • 26Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 10WGBS
  • 5GRO-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 275DNA binding
  • 219DNA accessibility
  • 198Transcription
  • 32DNA methylation
  • 263D chromatin structure
Target of assay
  • 229histone
  • 229histone modification
  • 122broad histone mark
  • 107narrow histone mark
  • 33control
  • 18transcription factor
  • 10RNA binding protein
  • 5nucleotide modification
Date released
  • 129August, 2017
  • 105May, 2021
  • 103February, 2023
  • 102August, 2021
  • 98February, 2021
  • 64October, 2019
  • 58May, 2020
  • 46March, 2020
  • 42May, 2022
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 14November, 2017
  • 10November, 2020
  • 8January, 2018
  • 7October, 2017
  • 5December, 2019
  • 4July, 2018
  • 2March, 2019
  • 2November, 2019
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2018
  • 1May, 2023
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 895Homo sapiens
Biosample type
  • 628tissue
  • 130primary cell
  • 96in vitro differentiated cells
  • 39cell line
  • 5stem cell
Organ
  • 182heart
  • 92bone element
  • 86connective tissue
  • 79liver
  • 72pancreas
  • 55epithelium
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 19kidney
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2vein
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 898AMP
Genome assembly (visualization)
  • 186hg19
  • 80GRCh38
  • 5hg18
Lab
  • 723AMP-T2D consortium
  • 83Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 138inconsistent ontology term
  • 12audit script error
Audit category:
  • 1missing controlled_by
Audit category:
  • 1inconsistent assembly
files.file_type!
  • bam
BIOSAMPLE
ASSAY

898 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
total RNA-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
WGBS
GRO-seq
DNase-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans41171841141
bone element84
liver23201201113
left cardiac atrium4018
subcutaneous abdominal adipose tissue363
primary cell
CD8-positive, alpha-beta T cell332
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
macrophage11
gabaergic neuron3
in vitro differentiated cells
embryonic stem cell37551
adipocyte1471
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
cell line
EndoC_BH1181621
HepG2121
GM128781
MCF-71
MIN61
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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