Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2874target gene predictions
  • 2636pQTL
  • 1671candidate regulatory elements
  • 977histone modifications
  • 916accessible chromatin
  • 811binding sites
  • 459gene expression
  • 363differential activity
  • 160eQTL
  • 140variant allelic effects
  • 75chromatin state
  • 74Fine-mapped variants
  • 6caQTL
  • 5hQTL
  • 5sQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Date released
  • 2636February, 2025
  • 2583February, 2021
  • 1984July, 2026
  • 1678September, 2022
  • 384May, 2021
  • 320May, 2026
  • 319February, 2024
  • 289June, 2020
  • 152May, 2020
  • 128March, 2020
  • 106January, 2022
  • 94October, 2022
  • 83January, 2020
  • 77August, 2021
  • 64February, 2020
  • 61March, 2023
  • 43May, 2022
  • 41November, 2022
  • 35August, 2017
  • 31February, 2023
  • 30March, 2024
  • 13November, 2019
  • 9August, 2018
  • 9October, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1April, 2019
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 7548bed bed3+
  • 3206tsv
  • bed bed9
  • 243bigWig
  • 83txt
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 11136Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 1848ChIP-Atlas
  • 1666EpiMap
  • 1458ENCODE-rE2G
  • 960ENCODE
  • 523DGA
  • 393HDMA
  • 362T1D
  • 320pyxis
  • 219BLUEPRINT
  • 1744DN
  • 173AMP
  • 151GTEx
  • 133CATlas
  • 113 T2DKP
  • 111T2D
  • 101eQTLCatalogue
  • 88CMDGA
  • 67HPAP
  • 67T2DKP
  • 12ROADMAP
Biosample type
  • 5441tissue
  • 2900primary cell
  • 2371cell line
  • 467in vitro differentiated cells
  • 3stem cell
Organ
  • 3342blood
  • 2828bodily fluid
  • 2810vasculature
  • 2793blood vessel
  • 2655vein
  • 834brain
  • 539epithelium
  • 501kidney
  • 404heart
  • 386connective tissue
  • 358lung
  • 284intestine
  • 278musculature of body
  • 266pancreas
  • 252skin of body
  • 194limb
  • 187large intestine
  • 186embryo
  • 185liver
  • 148eye
  • 138extraembryonic component
  • 134adipose tissue
  • 111muscle organ
  • 108stomach
  • 87bone element
  • 87uterus
  • 84mammary gland
  • 81thymus
  • 79placenta
  • 78adrenal gland
  • 75artery
  • 74prostate gland
  • 74small intestine
  • 60__MARKER__
  • 60ureter
  • 57spleen
  • 54gonad
  • 54lymph node
  • 54penis
  • 41spinal cord
  • 41thyroid gland
  • 37esophagus
  • 27testis
  • 26ovary
  • 21nerve
  • 19lymphoid tissue
  • 19skeleton
  • 17mouth
  • 13breast
  • 13pituitary gland
  • 11bronchus
  • 11urinary bladder
  • 10lymphatic vessel
  • 10tongue
  • 10vagina
  • 9bone marrow
  • 5trachea
  • 3nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 11183AMP
Genome assembly (visualization)
  • 5599hg19
  • 2618GRCh38
  • 4hg18
files.file_type!
  • bed bed9
BIOSAMPLE
TYPE

11183 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
candidate regulatory elements
histone modifications
accessible chromatin
binding sites
gene expression
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
representative DNase hypersensitivity sites
tissue
whole blood26351
stomach42401311
heart383715132
head of caudate nucleus86
brain3029321121
primary cell
monocyte1861711544211
T-cell644
CD8-positive, alpha-beta T cell25730221
fibroblast242411026
CD4-positive, alpha-beta T cell5183
cell line
HeLa-S35951
A5493321112
H1-hESC3911128
K5623071121
MCF-7139213
in vitro differentiated cells
hematopoietic multipotent progenitor cell22191111
neural progenitor cell6515107
adipocyte7414114
cardiomyocytes11
mesenchymal stem cell43111
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego