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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1271total RNA-seq
  • 542ChIP-seq
  • 217single cell RNA-seq
  • 179ATAC-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1506Transcription
  • 542DNA binding
  • 184DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 339control
  • 166histone
  • 166histone modification
  • 85narrow histone mark
  • 81broad histone mark
  • 45transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
  • 1recombinant protein
Date released
  • 647February, 2021
  • 269August, 2017
  • 269May, 2020
  • 198May, 2021
  • 168July, 2018
  • 125August, 2021
  • 125October, 2019
  • 101July, 2019
  • 93November, 2017
  • 57March, 2020
  • 49April, 2018
  • 40February, 2023
  • 31October, 2018
  • 28May, 2022
  • 27September, 2018
  • 25February, 2020
  • 24November, 2019
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 15April, 2019
  • 15November, 2018
  • 14November, 2020
  • 10December, 2019
  • 10October, 2017
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 6September, 2017
  • 5December, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3206bam
  • 2953bigWig
  • bed narrowPeak
  • 1486tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2453Homo sapiens
Biosample type
  • 1615tissue
  • 348primary cell
  • 259in vitro differentiated cells
  • 229cell line
  • 6stem cell
Organ
  • 606connective tissue
  • 545pancreas
  • 478adipose tissue
  • 333liver
  • 219epithelium
  • 202heart
  • 150bone element
  • 103vasculature
  • 101blood vessel
  • 83brain
  • 67artery
  • 44kidney
  • 36musculature of body
  • 30limb
  • 28eye
  • 23embryo
  • 16nerve
  • 11spleen
  • 9vein
  • 8skeleton
  • 7blood
  • 7bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2457AMP
Genome assembly (visualization)
  • 1506hg19
  • 1373GRCh38
  • 5hg18
Lab
  • 2365AMP-T2D consortium
  • 59Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 282inconsistent ontology term
  • 12audit script error
Audit category:
  • 41missing controlled_by
Audit category:
  • 2inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

2457 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
DNase-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
adipose tissue3821213
islet of Langerhans2845161841141
liver16763113111
bone element84
bone tissue58
primary cell
pancreatic alpha cell10612
pancreatic beta cell10612
naive thymus-derived CD4-positive, alpha-beta T cell1222
CD4-positive, alpha-beta memory T cell22
pancreatic acinar cell412
in vitro differentiated cells
cardiomyocytes59
embryonic stem cell73851
adipocyte5257
cardiac precursors (cardiac muscle cell)191
neural progenitor cell78
cell line
HepG2567211
EndoC_BH1312181621
smooth muscle cell of the coronary artery522
H1-hESC8
Panc171
stem cell
hESC11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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