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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1271total RNA-seq
  • 964ChIP-seq
  • 362ATAC-seq
  • 217single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5GRO-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1506Transcription
  • 964DNA binding
  • 367DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 535histone modification
  • 534histone
  • 339control
  • 319narrow histone mark
  • 214broad histone mark
  • 98transcription factor
  • 20RNA binding protein
  • 8recombinant protein
  • 5nucleotide modification
  • 2chromatin remodeller
Date released
  • 670February, 2021
  • 369August, 2017
  • 296May, 2020
  • 246May, 2021
  • 244October, 2019
  • 168July, 2018
  • 151August, 2021
  • 106July, 2019
  • 103February, 2023
  • 94November, 2017
  • 66May, 2022
  • 61November, 2019
  • 59September, 2018
  • 57March, 2020
  • 49April, 2018
  • 44December, 2017
  • 40May, 2024
  • 39February, 2018
  • 31October, 2018
  • 25February, 2020
  • 23May, 2019
  • 16April, 2019
  • 16October, 2017
  • 15November, 2018
  • 15November, 2020
  • 10December, 2019
  • 9January, 2019
  • 8January, 2018
  • 8June, 2019
  • 6September, 2017
  • 5December, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1188fastq
  • bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3058Homo sapiens
Biosample type
  • 1972tissue
  • 450primary cell
  • 370in vitro differentiated cells
  • 262cell line
  • 8stem cell
Organ
  • 664pancreas
  • 651connective tissue
  • 481adipose tissue
  • 402liver
  • 299heart
  • 292epithelium
  • 159brain
  • 158bone element
  • 153vasculature
  • 151blood vessel
  • 116artery
  • 59kidney
  • 55eye
  • 49musculature of body
  • 38limb
  • 37embryo
  • 17nerve
  • 16skeleton
  • 12spleen
  • 9vein
  • 7blood
  • 7bodily fluid
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3062AMP
Genome assembly (visualization)
  • 2035hg19
  • 1855GRCh38
  • 5hg18
Lab
  • 2862AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 318inconsistent ontology term
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 1inconsistent assembly
files.file_type!
  • bigBed narrowPeak
BIOSAMPLE
ASSAY

3062 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
GRO-seq
DNase-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans2846955641141
adipose tissue3821213
liver16710720113111
bone element84
bone tissue58
primary cell
CD8-positive, alpha-beta T cell2332
pancreatic alpha cell101312
pancreatic beta cell101312
pancreatic ductal cell41310
naive thymus-derived CD4-positive, alpha-beta T cell1222
in vitro differentiated cells
adipocyte5675
cardiomyocytes593
embryonic stem cell74051
neural progenitor cell72110
pancreatic endoderm4181
cell line
HepG25671211
EndoC_BH13113191621
smooth muscle cell of the coronary artery5268
H1-hESC8
Panc171
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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