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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1126total RNA-seq
  • 908ChIP-seq
  • 339ATAC-seq
  • 200DNase-seq
  • 117single cell RNA-seq
  • 87RNA microarray
  • 39pCHi-C
  • 25Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 17WGBS
  • 10MeRIP-seq
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1261Transcription
  • 908DNA binding
  • 544DNA accessibility
  • 35DNA methylation
  • 253D chromatin structure
Target of assay
  • 696histone
  • 696histone modification
  • 358narrow histone mark
  • 338broad histone mark
  • 171control
  • 49transcription factor
  • 24RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 670February, 2021
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 151August, 2021
  • 124August, 2017
  • 120May, 2019
  • 118July, 2018
  • 108July, 2019
  • 103February, 2023
  • 82November, 2017
  • 80April, 2019
  • 61November, 2019
  • 57March, 2020
  • 42May, 2022
  • 40May, 2024
  • 25February, 2020
  • 16November, 2020
  • 16October, 2018
  • 10December, 2019
  • 6October, 2017
  • 5April, 2018
  • 3January, 2018
  • 2March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2913Homo sapiens
Biosample type
  • 2157tissue
  • 319primary cell
  • 246in vitro differentiated cells
  • 190cell line
  • 4stem cell
Organ
  • 578connective tissue
  • 447adipose tissue
  • 393heart
  • 354pancreas
  • 295liver
  • 265brain
  • 230vasculature
  • 227blood vessel
  • 180epithelium
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 43nerve
  • 22vein
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1blood
  • 1bodily fluid
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2916AMP
Genome assembly (visualization)
  • 1991hg19
  • 1913GRCh38
Lab
  • 2741AMP-T2D consortium
  • 83Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 331inconsistent ontology term
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

2916 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
small RNA-seq
RRBS
WGBS
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
adipose tissue38231
islet of Langerhans187413641141
liver167782011112
bone element84
heart left ventricle33523181114
primary cell
CD8-positive, alpha-beta T cell2332
naive thymus-derived CD4-positive, alpha-beta T cell1222
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
monocyte11151
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53751
neural progenitor cell72110
adipocyte5147
cardiac precursors (cardiac muscle cell)1911
cell line
EndoC_BH13113191621
smooth muscle cell of the coronary artery5268
Panc11311
H1-hESC8
RCC 7860 HIF1a re-expression14
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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