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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 375ATAC-seq
  • 212DNase-seq
  • 85RNA microarray
  • 64total RNA-seq
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 9pCHi-C
  • 6single cell RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 594DNA accessibility
  • 70Transcription
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 336control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 322August, 2017
  • 298October, 2019
  • 218June, 2019
  • 152May, 2020
  • 124May, 2021
  • 120May, 2019
  • 117February, 2021
  • 94December, 2017
  • 88November, 2018
  • 87February, 2023
  • 80April, 2019
  • 74October, 2018
  • 66May, 2022
  • 47September, 2018
  • 43July, 2019
  • 41November, 2019
  • 40May, 2024
  • 38August, 2021
  • 35December, 2018
  • 25January, 2019
  • 24February, 2018
  • 22October, 2017
  • 14March, 2020
  • 12November, 2020
  • 11September, 2017
  • 8January, 2018
  • 4July, 2018
  • 3March, 2019
  • 1August, 2018
  • 1August, 2022
  • 1December, 2019
  • 1May, 2023
  • 1October, 2022
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2608Homo sapiens
Biosample type
  • 1458tissue
  • 509cell line
  • 391primary cell
  • 256in vitro differentiated cells
  • 4stem cell
Organ
  • 595liver
  • 347pancreas
  • 260brain
  • 225heart
  • 220epithelium
  • 201connective tissue
  • 168vasculature
  • 162blood vessel
  • 139kidney
  • 115limb
  • 100bone element
  • 90adipose tissue
  • 87musculature of body
  • 83artery
  • 61blood
  • 61bodily fluid
  • 56eye
  • 38nerve
  • 24spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 16skeleton
  • 4gonad
  • 4ovary
  • 2pituitary gland
  • 1lymph node
  • 1pericardium
  • 1skin of body
Project
  • 2618AMP
Genome assembly (visualization)
  • 1694hg19
  • 1551GRCh38
  • 5hg18
Lab
  • 2418AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 198inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
files.file_type!
  • tsv
BIOSAMPLE
ASSAY

2618 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
total RNA-seq
WGBS
Hi-C
RRBS
MeRIP-seq
pCHi-C
single cell RNA-seq
FAIRE-seq
GRO-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
liver145202203111
islet of Langerhans6954124114411
bone element84
heart left ventricle3523411
body of pancreas35442
cell line
HepG23601111
GM12878601
EndoC_BH113181621
Panc11311
smooth muscle cell of the coronary artery68
primary cell
CD8-positive, alpha-beta T cell3322
naive thymus-derived CD4-positive, alpha-beta T cell2221
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
in vitro differentiated cells
adipocyte67711
embryonic stem cell4055
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
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