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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1223ChIP-seq
  • 210ATAC-seq
  • 209DNase-seq
  • 5FAIRE-seq
Assay category
  • 1223DNA binding
  • 424DNA accessibility
Target of assay
  • 760histone modification
  • 759histone
  • 458transcription factor
  • 383narrow histone mark
  • 375broad histone mark
  • 104RNA binding protein
  • 88recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 313November, 2017
  • 210June, 2019
  • 189October, 2019
  • 142August, 2017
  • 97May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 63February, 2023
  • 48May, 2021
  • 46September, 2018
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 26August, 2021
  • 23February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 5September, 2017
  • 2November, 2020
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 1641Homo sapiens
Biosample type
  • 918tissue
  • 388cell line
  • 211primary cell
  • 128in vitro differentiated cells
  • 2stem cell
Organ
  • 427liver
  • 210pancreas
  • 203brain
  • 191heart
  • 149epithelium
  • 133vasculature
  • 129blood vessel
  • 119kidney
  • 92limb
  • 74artery
  • 73connective tissue
  • 60musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 13vein
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1647AMP
Genome assembly (visualization)
  • 1492hg19
  • 1480GRCh38
Lab
  • 1539AMP-T2D consortium
  • 48Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
Audit category:
  • 60inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 48missing controlled_by
Audit category:
  • 54inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

1647 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
islet of Langerhans183711
coronary artery3362
left cardiac atrium401
body of pancreas2644
cell line
HepG22931
GM1287854
EndoC_BH1111
smooth muscle cell of the coronary artery48
Panc161
primary cell
CD8-positive, alpha-beta T cell30
pancreatic ductal cell134
skeletal muscle myoblast142
pancreatic beta cell77
endothelial cell of umbilical vein1021
in vitro differentiated cells
adipocyte421
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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