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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 16Hi-C
Assay category
  • 163D chromatin structure
Date released
  • 10March, 2020
  • 4October, 2019
  • 2November, 2019
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 16Homo sapiens
Biosample type
  • 9tissue
  • 4in vitro differentiated cells
  • 2primary cell
  • 1cell line
Organ
  • 3blood vessel
  • 3epithelium
  • 3heart
  • 3pancreas
  • 3vasculature
  • 2musculature of body
  • 2vein
  • 1liver
Project
  • 16AMP
Genome assembly (visualization)
  • 16hg19
Lab
  • 16AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
  • 1audit script error
BIOSAMPLE
ASSAY

16 results

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Hi-C
tissue
psoas muscle2
aorta1
heart1
heart left ventricle1
heart right ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
primary cell
endothelial cell of umbilical vein2
cell line
EndoC_BH11
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