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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1207total RNA-seq
  • 211single cell RNA-seq
  • 31pCHi-C
  • 18small RNA-seq
  • 14ATAC-seq
  • 3snDrop-seq
  • 2RNA microarray
Assay category
  • 1436Transcription
  • 14DNA accessibility
Target of assay
  • 3control
Date released
  • 553February, 2021
  • 164July, 2018
  • 144May, 2020
  • 122May, 2021
  • 113August, 2021
  • 89August, 2017
  • 65July, 2019
  • 49April, 2018
  • 43March, 2020
  • 26September, 2018
  • 25February, 2020
  • 20November, 2019
  • 16February, 2023
  • 16October, 2019
  • 15February, 2018
  • 9December, 2019
  • 5January, 2019
  • 4November, 2020
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
Available data
  • 3206bam
  • 2953bigWig
  • 1647bed narrowPeak
  • 1486tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 1486Homo sapiens
Biosample type
  • 1075tissue
  • 168primary cell
  • 131in vitro differentiated cells
  • 108cell line
  • 4stem cell
Organ
  • 478connective tissue
  • 408pancreas
  • 401adipose tissue
  • 168heart
  • 165liver
  • 148epithelium
  • 68blood vessel
  • 68vasculature
  • 58artery
  • 58bone element
  • 26brain
  • 24kidney
  • 14embryo
  • 9musculature of body
  • 7limb
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1486AMP
Genome assembly (visualization)
  • 1304hg19
  • 1302GRCh38
Lab
  • 1486AMP-T2D consortium
Audit category:
  • 144inconsistent ontology term
  • 9audit script error
BIOSAMPLE
ASSAY

1486 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
snDrop-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26061
liver14711
bone tissue58
heart left ventricle3181
primary cell
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1311
H1-hESC8
HepG251
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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