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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1256total RNA-seq
  • 1069ChIP-seq
  • 388ATAC-seq
  • 209DNase-seq
  • 134single cell RNA-seq
  • 87RNA microarray
  • 40pCHi-C
  • 26Hi-C
  • 22WGBS
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1408Transcription
  • 1069DNA binding
  • 602DNA accessibility
  • 40DNA methylation
  • 263D chromatin structure
Target of assay
  • 704histone modification
  • 703histone
  • 362narrow histone mark
  • 341broad histone mark
  • 212control
  • 158transcription factor
  • 45RNA binding protein
  • 11chromatin remodeller
  • 7recombinant protein
  • 5nucleotide modification
  • 3other context
  • 3other post-translational modification
Date released
  • 670February, 2021
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 232August, 2017
  • 218June, 2019
  • 151August, 2021
  • 126July, 2018
  • 125November, 2017
  • 120May, 2019
  • 108July, 2019
  • 103February, 2023
  • 80April, 2019
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 53October, 2018
  • 41September, 2018
  • 40May, 2024
  • 40November, 2018
  • 33December, 2018
  • 25February, 2020
  • 16November, 2020
  • 13January, 2019
  • 12April, 2018
  • 12October, 2017
  • 10December, 2019
  • 5September, 2017
  • 4December, 2017
  • 3January, 2018
  • 3March, 2019
  • 2August, 2018
  • 1August, 2022
  • 1June, 2018
  • 1May, 2023
  • 1October, 2022
Available data
  • 2404bam
  • 2261bigWig
  • 1388tsv
  • 1124bed narrowPeak
  • 660bigBed narrowPeak
  • 373fastq
  • 275tagAlign
  • 233bed broadPeak
  • 220bed bed3+
  • 206bigBed broadPeak
  • 101txt
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 2ibed
  • 1tagAlign bed3+
  • 1tar
Organism
  • 3286Homo sapiens
Biosample type
  • 2358tissue
  • 386primary cell
  • 293cell line
  • 248in vitro differentiated cells
  • 4stem cell
Organ
  • 605connective tissue
  • 551pancreas
  • 473adipose tissue
  • 393heart
  • 374liver
  • 266brain
  • 240epithelium
  • 230vasculature
  • 227blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 94musculature of body
  • 61eye
  • 46blood
  • 46bodily fluid
  • 43nerve
  • 22vein
  • 18spleen
  • 18ureter
  • 16skeleton
  • 10embryo
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3289AMP
Genome assembly (visualization)
  • 2307hg19
  • 2214GRCh38
Lab
  • 3089AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 331inconsistent ontology term
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
  • 1inconsistent assembly
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

3289 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
Hi-C
WGBS
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans284415541141
adipose tissue38231
liver1679120211121
bone element84
heart left ventricle33523181141
primary cell
CD8-positive, alpha-beta T cell2332
naive thymus-derived CD4-positive, alpha-beta T cell1222
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
pancreatic beta cell1072
cell line
EndoC_BH13113191621
smooth muscle cell of the coronary artery5268
HepG25511211
GM12878451
Panc11311
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53751
neural progenitor cell72110
adipocyte51471
cardiac precursors (cardiac muscle cell)1911
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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