Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 2872target gene predictions
  • 2636pQTL
  • 944chromatin state
  • 905accessible chromatin
  • 834candidate regulatory elements
  • 363differential activity
  • 289gene expression
  • 157eQTL
  • 139variant allelic effects
  • 137histone modifications
  • 93binding sites
  • 74Fine-mapped variants
  • 6caQTL
  • 5hQTL
  • 5sQTL
  • 4variant to gene
  • 3meQTL
  • 3other
Date released
  • 2636February, 2025
  • February, 2021
  • 2511September, 2022
  • 1984July, 2026
  • 389May, 2021
  • 320May, 2026
  • 319February, 2024
  • 289June, 2020
  • 155May, 2020
  • 128March, 2020
  • 106January, 2022
  • 94October, 2022
  • 89January, 2020
  • 77August, 2021
  • 64February, 2020
  • 61March, 2023
  • 43May, 2022
  • 41November, 2022
  • 35August, 2017
  • 31February, 2023
  • 30March, 2024
  • 14November, 2019
  • 14October, 2019
  • 9August, 2018
  • 9May, 2019
  • 8April, 2019
  • 3November, 2020
  • 3September, 2018
  • 2January, 2018
  • 1August, 2020
  • 1August, 2022
  • 1July, 2020
  • 1June, 2021
Available data
  • 5136bed bed3+
  • 3035tsv
  • 869bed bed9
  • 229bigWig
  • 40bigBed bed9
  • 34bed bed9+
  • 24csv
  • 13bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 9422Homo sapiens
Collection Tags
  • 2635UK_Biobank
  • 2499EpiMap
  • 1458ENCODE-rE2G
  • 393HDMA
  • 371DGA
  • 356T1D
  • 320pyxis
  • 290ChIP-Atlas
  • 219BLUEPRINT
  • 1744DN
  • 153AMP
  • 149GTEx
  • 133CATlas
  • 122ENCODE
  • 111T2D
  • 101eQTLCatalogue
  • 91 T2DKP
  • 88CMDGA
  • 67HPAP
  • 67T2DKP
  • 12ROADMAP
Biosample type
  • 5293tissue
  • 2608primary cell
  • 1246cell line
  • 318in vitro differentiated cells
  • 3stem cell
Organ
  • 3295blood
  • 2793vasculature
  • 2784blood vessel
  • 2779bodily fluid
  • 2652vein
  • 790brain
  • 402heart
  • 397kidney
  • 393epithelium
  • 358lung
  • 318connective tissue
  • 268intestine
  • 257musculature of body
  • 248pancreas
  • 218skin of body
  • 186limb
  • 174large intestine
  • 173liver
  • 160embryo
  • 140eye
  • 138extraembryonic component
  • 119adipose tissue
  • 111muscle organ
  • 102stomach
  • 81thymus
  • 81uterus
  • 78adrenal gland
  • 77placenta
  • 75small intestine
  • 70mammary gland
  • 68artery
  • 65bone element
  • 60__MARKER__
  • 58prostate gland
  • 55ureter
  • 53spleen
  • 50gonad
  • 41thyroid gland
  • 40spinal cord
  • 36penis
  • 35lymph node
  • 34esophagus
  • 26ovary
  • 23testis
  • 22nerve
  • 19lymphoid tissue
  • 17mouth
  • 13skeleton
  • 12breast
  • 12pituitary gland
  • 12urinary bladder
  • 10tongue
  • 10vagina
  • 8bronchus
  • 7lymphatic vessel
  • 5bone marrow
  • 4nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
  • 1trachea
Project
  • 9469AMP
Genome assembly (visualization)
  • 4056hg19
  • 3471GRCh38
  • 4hg18
month_released!
  • February, 2021
BIOSAMPLE
TYPE

9469 results

search-icontable-tab-icon
Clear Filters
target gene predictions
pQTL
chromatin state
accessible chromatin
candidate regulatory elements
differential activity
gene expression
eQTL
variant allelic effects
histone modifications
binding sites
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
tissue
whole blood26351
heart382151922
head of caudate nucleus86
stomach421931911
brain3018216121
primary cell
monocyte117415484211
fibroblast242410261
T-cell64
CD8-positive, alpha-beta T cell2512230
stimulated activated CD4-positive, alpha-beta T cell55
cell line
A54933181181
HeLa-S359331
H1-hESC3911181
K562307161
MCF-7135151
in vitro differentiated cells
neural progenitor cell64104714
hematopoietic multipotent progenitor cell22101101
adipocyte7642
embryonic stem cell155
progenitor cell of endocrine pancreas19
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego