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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1757ChIP-seq
  • 726total RNA-seq
  • 367ATAC-seq
  • 212DNase-seq
  • 211single cell RNA-seq
  • 38pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3RNA microarray
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1757DNA binding
  • 955Transcription
  • 586DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 498transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 336control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • February, 2021
  • 411August, 2017
  • 406November, 2017
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 168July, 2018
  • 151August, 2021
  • 120May, 2019
  • 108July, 2019
  • 103February, 2023
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2634bam
  • 2402bigWig
  • 1624bed narrowPeak
  • 1188fastq
  • 1042bigBed narrowPeak
  • 933tsv
  • 321bed broadPeak
  • 306tagAlign
  • 285bigBed broadPeak
  • 269bed bed3+
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12txt
  • 10bed bed3
  • 5hdf5
  • 4tar
  • 2csv
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3424Homo sapiens
Biosample type
  • 1988tissue
  • 556primary cell
  • 521cell line
  • 361in vitro differentiated cells
  • 8stem cell
Organ
  • 757liver
  • 729pancreas
  • 342epithelium
  • 327heart
  • 286brain
  • 224connective tissue
  • 170vasculature
  • 164blood vessel
  • 155kidney
  • 116limb
  • 105adipose tissue
  • 96musculature of body
  • 75artery
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 8bone element
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3434AMP
Genome assembly (visualization)
  • 2424hg19
  • 2285GRCh38
  • 5hg18
Lab
  • 3234AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 214inconsistent ontology term
  • 28inconsistent control
  • 7audit script error
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • February, 2021
BIOSAMPLE
ASSAY

3434 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
RNA microarray
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans692845516411411
liver14516720213111
heart left ventricle35323181411
left cardiac atrium40118
body of pancreas3534422
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
cell line
HepG23605111
GM12878601
EndoC_BH1135191621
Panc11311
H1-hESC8
in vitro differentiated cells
adipocyte67131
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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