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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 1259total RNA-seq
  • 300ATAC-seq
  • 216single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1DNAme array
  • 1MPRA
Assay category
  • 1765DNA binding
  • 1493Transcription
  • 519DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 670February, 2021
  • 411August, 2017
  • 406November, 2017
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 168July, 2018
  • 151August, 2021
  • 120May, 2019
  • 108July, 2019
  • February, 2023
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3206bam
  • 2953bigWig
  • 1584bed narrowPeak
  • 1470tsv
  • 1188fastq
  • 1042bigBed narrowPeak
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 267bed bed3+
  • 97txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2bed bed3
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3992Homo sapiens
Biosample type
  • 2456tissue
  • 616cell line
  • 547primary cell
  • 374in vitro differentiated cells
  • 8stem cell
Organ
  • 760liver
  • 754pancreas
  • 665connective tissue
  • 490adipose tissue
  • 357heart
  • 353epithelium
  • 285brain
  • 201vasculature
  • 195blood vessel
  • 163kidney
  • 150bone element
  • 122limb
  • 106artery
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 43nerve
  • 37embryo
  • 30eye
  • 25spleen
  • 22vein
  • 18ureter
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 4001AMP
Genome assembly (visualization)
  • 2956hg19
  • 2818GRCh38
  • 5hg18
Lab
  • 3801AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 332inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

4001 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
DNAme array
MPRA
tissue
islet of Langerhans692845561411411
adipose tissue2382213
liver145167201213111
bone element84
heart left ventricle35321831411
cell line
HepG236051211
EndoC_BH1133119162
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte67461
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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