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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1638ChIP-seq
  • 1195total RNA-seq
  • 335ATAC-seq
  • 193DNase-seq
  • 147single cell RNA-seq
  • 86RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 21Hi-C
  • 18small RNA-seq
  • 15RRBS
  • 5GRO-seq
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2snATAC-seq
  • 1DNAme array
  • 1MPRA
Assay category
  • 1638DNA binding
  • 1360Transcription
  • 534DNA accessibility
  • 44DNA methylation
  • 213D chromatin structure
Target of assay
  • 835histone modification
  • 834histone
  • 494transcription factor
  • 421narrow histone mark
  • 412broad histone mark
  • 309control
  • 105RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 2nucleotide modification
Date released
  • 644February, 2021
  • 400November, 2017
  • 382August, 2017
  • 296May, 2020
  • 279October, 2019
  • 221May, 2021
  • 198June, 2019
  • 145August, 2021
  • 135July, 2018
  • 115May, 2019
  • 95July, 2019
  • 88February, 2023
  • 88November, 2018
  • 80April, 2019
  • 75December, 2017
  • 74October, 2018
  • 66May, 2022
  • 54March, 2020
  • 45November, 2019
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16April, 2018
  • 12September, 2018
  • 10November, 2020
  • 8January, 2018
  • 6September, 2017
  • 4December, 2019
  • 3March, 2019
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2893bam
  • 2666bigWig
  • 1498bed narrowPeak
  • 1338tsv
  • 1000fastq
  • 966bigBed narrowPeak
  • 307tagAlign
  • 299bed broadPeak
  • 263bigBed broadPeak
  • 250bed bed3+
  • 101txt
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 16bedpe bed3+
  • 13hic
  • 12bed bed3
  • 8csv
  • 4bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3727Homo sapiens
Biosample type
  • 2518tissue
  • 542cell line
  • 363in vitro differentiated cells
  • 305primary cell
  • 8stem cell
Organ
  • 760liver
  • 755pancreas
  • 679connective tissue
  • 491adipose tissue
  • 393heart
  • epithelium
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3736AMP
Genome assembly (visualization)
  • 2694hg19
  • 2573GRCh38
  • 5hg18
Lab
  • 3542AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 255inconsistent ontology term
  • 28inconsistent control
  • 10audit script error
  • 1inconsistent replicate
Audit category:
  • 68missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

3736 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
snATAC-seq
DNAme array
MPRA
tissue
islet of Langerhans692845516411141
adipose tissue2382313
liver145167202113111
bone element84
heart left ventricle35323181411
cell line
HepG236051211
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
H1-hESC8
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
primary cell
CD8-positive, alpha-beta T cell3322
naive thymus-derived CD4-positive, alpha-beta T cell2122
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
skeletal muscle myoblast15121
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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