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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 334total RNA-seq
  • 214ChIP-seq
  • 90ATAC-seq
  • 80single cell RNA-seq
  • 10MeRIP-seq
  • 8DNase-seq
  • 4Hi-C
  • 4WGBS
  • 2Capture-C
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 416Transcription
  • 214DNA binding
  • 101DNA accessibility
  • 6DNA methylation
  • 43D chromatin structure
Target of assay
  • 147histone
  • 147histone modification
  • 78broad histone mark
  • 69narrow histone mark
  • 53control
  • 19transcription factor
  • 9RNA binding protein
  • 5nucleotide modification
Date released
  • 188August, 2017
  • 157July, 2018
  • 72September, 2018
  • 60May, 2021
  • 55November, 2019
  • 53October, 2018
  • 39April, 2018
  • 26February, 2021
  • 24May, 2022
  • 18October, 2019
  • 11September, 2017
  • 10November, 2020
  • 7March, 2020
  • 7November, 2018
  • 6July, 2019
  • 4June, 2019
  • 4October, 2017
  • 3August, 2018
  • 3March, 2019
  • 2August, 2021
  • 2May, 2019
  • 1August, 2022
  • 1February, 2020
  • 1February, 2023
  • 1June, 2018
Available data
  • 683bam
  • 606bigWig
  • 408tsv
  • 401fastq
  • 210bed narrowPeak
  • 91bigBed narrowPeak
  • 29bed bed3+
  • 20bed broadPeak
  • 19tagAlign
  • 7bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3bedpe bed3+
  • 3hic
  • 1hdf5
Organism
  • 747Homo sapiens
Biosample type
  • 470tissue
  • 194primary cell
  • 88cell line
  • 3in vitro differentiated cells
Organ
  • 760liver
  • 755pancreas
  • 679connective tissue
  • 491adipose tissue
  • 393heart
  • 368epithelium
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 755AMP
Genome assembly (visualization)
  • 646hg19
  • 617GRCh38
Lab
  • 717AMP-T2D consortium
  • 25Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 77inconsistent ontology term
  • 1audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

755 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
MeRIP-seq
DNase-seq
Hi-C
WGBS
Capture-C
FAIRE-seq
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
snATAC-seq
tissue
islet of Langerhans27048456411111
body of pancreas3354422
pancreas216212111
endocrine pancreas16
primary cell
pancreatic beta cell1013712
pancreatic alpha cell1013612
pancreatic ductal cell413410
pancreatic acinar cell48512
pancreatic endocrine cell23
cell line
EndoC_BH13113196121
Panc11311
in vitro differentiated cells
pancreatic PP cell3
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