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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1758ChIP-seq
  • 1271total RNA-seq
  • 389ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 86RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1DNAme array
Assay category
  • 1758DNA binding
  • 1506Transcription
  • 608DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 920histone modification
  • 919histone
  • 503transcription factor
  • 466narrow histone mark
  • 452broad histone mark
  • 338control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 670February, 2021
  • 406November, 2017
  • 404August, 2017
  • 314October, 2019
  • 296May, 2020
  • 246May, 2021
  • 218June, 2019
  • 168July, 2018
  • 150August, 2021
  • 120May, 2019
  • 108July, 2019
  • 102February, 2023
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 66May, 2022
  • 61November, 2019
  • 57March, 2020
  • 49April, 2018
  • 40May, 2024
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 16November, 2020
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 4August, 2018
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
Available data
  • 3199bam
  • 2947bigWig
  • 1641bed narrowPeak
  • 1486tsv
  • 1181fastq
  • 1036bigBed narrowPeak
  • 315bed broadPeak
  • 307tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 100txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 4094Homo sapiens
Biosample type
  • 2525tissue
  • 615cell line
  • 559primary cell
  • 387in vitro differentiated cells
  • 8stem cell
Organ
  • 760liver
  • 747pancreas
  • 678connective tissue
  • 490adipose tissue
  • 393heart
  • 367epithelium
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 4094AMP
Genome assembly (visualization)
  • 2992hg19
  • 2847GRCh38
  • 5hg18
Lab
  • 3894AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 342inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

4094 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
MeRIP-seq
FAIRE-seq
GRO-seq
snDrop-seq
Capture-C
snATAC-seq
DNAme array
tissue
islet of Langerhans692845561411411
adipose tissue2382313
liver145167201213111
bone element84
heart left ventricle35321831411
cell line
HepG236051211
EndoC_BH1133119162
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
CD8-positive, alpha-beta T cell3322
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte67571
cardiomyocytes359
embryonic stem cell40751
neural progenitor cell21710
pancreatic endoderm1841
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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