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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1248total RNA-seq
  • 214single cell RNA-seq
  • 87RNA microarray
  • 18small RNA-seq
  • 10MeRIP-seq
  • 7ChIP-seq
  • 3snDrop-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
Assay category
  • 1480Transcription
  • 7DNA binding
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 5nucleotide modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 637February, 2021
  • 168July, 2018
  • 145May, 2020
  • 131May, 2021
  • 114August, 2021
  • 96August, 2017
  • 49April, 2018
  • 49July, 2019
  • 27May, 2022
  • 27September, 2018
  • 26October, 2019
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 14February, 2023
  • 14November, 2020
  • 11March, 2020
  • 10December, 2019
  • 3August, 2018
  • 3June, 2018
  • 2October, 2018
  • 1May, 2023
  • 1November, 2018
  • 1October, 2022
Available data
  • 1415tsv
  • 1289bam
  • 1284bigWig
  • 247fastq
  • 100txt
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 1579Homo sapiens
Biosample type
  • 1200tissue
  • 146primary cell
  • 138in vitro differentiated cells
  • 105cell line
Organ
  • 476connective tissue
  • 434pancreas
  • 401adipose tissue
  • 179liver
  • 162heart
  • 149epithelium
  • 146bone element
  • 65blood vessel
  • 65vasculature
  • 56artery
  • 21brain
  • 19eye
  • 19kidney
  • 14embryo
  • 8musculature of body
  • 4skeleton
  • 3limb
  • 1nerve
  • 1spinal cord
Project
  • 1589AMP
Genome assembly (visualization)
  • 1285hg19
  • 1283GRCh38
Lab
  • 1545AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 14Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 223inconsistent ontology term
  • 9audit script error
Audit category:
  • 1inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

1589 results

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Clear Filters
total RNA-seq
single cell RNA-seq
RNA microarray
small RNA-seq
MeRIP-seq
ChIP-seq
snDrop-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
tissue
adipose tissue382
islet of Langerhans28464
liver16711
bone element84
bone tissue58
primary cell
pancreatic alpha cell1012
pancreatic beta cell1012
pancreatic acinar cell412
pancreatic ductal cell410
pancreatic delta cell11
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
embryonic stem cell7
neural progenitor cell7
cell line
smooth muscle cell of the coronary artery52
EndoC_BH13161
H1-hESC8
early embryonic cell2
MIN61
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