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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1765ChIP-seq
  • 389ATAC-seq
  • 212DNase-seq
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 23total RNA-seq
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 3single cell RNA-seq
  • 2Capture-C
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1RNA microarray
Assay category
  • 1765DNA binding
  • 608DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
  • 26Transcription
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 334control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 322August, 2017
  • 288October, 2019
  • 218June, 2019
  • 151May, 2020
  • 120May, 2019
  • 115May, 2021
  • 94December, 2017
  • 90February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 59July, 2019
  • 46March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 39May, 2022
  • 38August, 2021
  • 35December, 2018
  • 33February, 2021
  • 30January, 2019
  • 24February, 2018
  • 22October, 2017
  • 11September, 2017
  • 8January, 2018
  • 3March, 2019
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1October, 2022
Available data
  • 1924bam
  • 1675bigWig
  • 1647bed narrowPeak
  • 1042bigBed narrowPeak
  • 948fastq
  • 321bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 269bed bed3+
  • 71tsv
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 2txt
  • 1tagAlign bed3+
Organism
  • 2515Homo sapiens
Biosample type
  • 1341tissue
  • 514cell line
  • 413primary cell
  • 249in vitro differentiated cells
  • 8stem cell
Organ
  • 581liver
  • 329pancreas
  • 265brain
  • 231heart
  • 220epithelium
  • 204connective tissue
  • 171vasculature
  • 165blood vessel
  • 144kidney
  • 119limb
  • 91adipose tissue
  • 88musculature of body
  • 85artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12bone element
  • 12skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2525AMP
Genome assembly (visualization)
  • 1719hg19
  • 1576GRCh38
  • 5hg18
Lab
  • 2369AMP-T2D consortium
  • 93Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 119inconsistent ontology term
  • 28inconsistent control
  • 3audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replicates.library.nucleic_acid_term_name!
  • RNA
BIOSAMPLE
ASSAY

2525 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
WGBS
Hi-C
total RNA-seq
RRBS
FAIRE-seq
GRO-seq
single cell RNA-seq
Capture-C
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
RNA microarray
tissue
liver1452021311
islet of Langerhans6955141111
heart left ventricle35231411
body of pancreas35442
coronary artery5362
cell line
HepG236012115
GM12878601
EndoC_BH11319121
Panc11311
smooth muscle cell of the coronary artery68
primary cell
CD8-positive, alpha-beta T cell332
naive thymus-derived CD4-positive, alpha-beta T cell222
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
endothelial cell of umbilical vein17221
in vitro differentiated cells
adipocyte6771
embryonic stem cell4051
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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