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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1632ChIP-seq
  • 1153total RNA-seq
  • 299ATAC-seq
  • 185DNase-seq
  • 128single cell RNA-seq
  • 87RNA microarray
  • 28WGBS
  • 23Hi-C
  • 21RRBS
  • 16pCHi-C
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 2Capture-C
  • 2FAIRE-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1MPRA
  • 1snATAC-seq
  • 1snDrop-seq
Assay category
  • 1632DNA binding
  • 1288Transcription
  • 487DNA accessibility
  • 49DNA methylation
  • 233D chromatin structure
Target of assay
  • 841histone modification
  • 840histone
  • 470transcription factor
  • 432broad histone mark
  • 407narrow histone mark
  • 322control
  • 104RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
  • 3nucleotide modification
Date released
  • 659February, 2021
  • 406November, 2017
  • 378August, 2017
  • 264October, 2019
  • 249May, 2020
  • 188June, 2019
  • 185May, 2021
  • 124July, 2018
  • 120May, 2019
  • 109August, 2021
  • 91December, 2017
  • 86November, 2018
  • 79April, 2019
  • 75October, 2018
  • 74February, 2023
  • 72July, 2019
  • 72September, 2018
  • 64May, 2022
  • 60November, 2019
  • 40May, 2024
  • 38February, 2018
  • 35December, 2018
  • 30January, 2019
  • 29March, 2020
  • 16October, 2017
  • 12November, 2020
  • 10April, 2018
  • 10December, 2019
  • 9September, 2017
  • 8January, 2018
  • 2June, 2018
  • 1August, 2018
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2835bam
  • 2601bigWig
  • 1524bed narrowPeak
  • 1249tsv
  • 1060fastq
  • 1002bigBed narrowPeak
  • 296bed broadPeak
  • 261bigBed broadPeak
  • 244tagAlign
  • 205bed bed3+
  • 96txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 15bedpe bed3+
  • 13hic
  • 6bed bed3
  • 6csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
Organism
  • 3588Homo sapiens
Biosample type
  • 2318tissue
  • 617cell line
  • 377primary cell
  • 279in vitro differentiated cells
  • 7stem cell
Organ
  • 744liver
  • 647pancreas
  • 626connective tissue
  • 474adipose tissue
  • 368heart
  • 290epithelium
  • 229vasculature
  • 223blood vessel
  • 215brain
  • 150bone element
  • 144kidney
  • 137artery
  • 119limb
  • 87musculature of body
  • 61blood
  • 61bodily fluid
  • 58eye
  • 42nerve
  • 35embryo
  • 24spleen
  • 21vein
  • 18ureter
  • 8skeleton
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
Project
  • 3598AMP
Genome assembly (visualization)
  • 2626hg19
  • 2541GRCh38
  • 5hg18
Lab
  • 3425AMP-T2D consortium
  • 87Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 295inconsistent ontology term
  • 28inconsistent control
  • 11audit script error
  • 1inconsistent replicate
Audit category:
  • 75missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

3598 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
Hi-C
RRBS
pCHi-C
small RNA-seq
MeRIP-seq
GRO-seq
Capture-C
FAIRE-seq
CRISPR genome editing followed by sgRNA sequencing
MPRA
snATAC-seq
snDrop-seq
tissue
islet of Langerhans492825011411
adipose tissue238213
liver1391652013111
bone element84
heart left ventricle3532218411
cell line
HepG236051112
EndoC_BH11331191621
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
CD8-positive, alpha-beta T cell332
pancreatic beta cell131071
pancreatic alpha cell131061
pancreatic endocrine cell23
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
adipocyte60441
cardiomyocytes347
embryonic stem cell2921
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
stem cell
hESC31
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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