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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1222total RNA-seq
  • 1195ChIP-seq
  • 302ATAC-seq
  • 211single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 32pCHi-C
  • 26WGBS
  • 18small RNA-seq
  • 16Hi-C
  • 5GRO-seq
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2Capture-C
  • 2RRBS
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1451Transcription
  • 1195DNA binding
  • 498DNA accessibility
  • 29DNA methylation
  • 163D chromatin structure
Target of assay
  • 800histone modification
  • 799histone
  • 407narrow histone mark
  • 391broad histone mark
  • 279control
  • 118transcription factor
  • 40RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2nucleotide modification
  • 1recombinant protein
Date released
  • 644February, 2021
  • 388August, 2017
  • 246May, 2021
  • 240May, 2020
  • 240October, 2019
  • 186June, 2019
  • 167July, 2018
  • 143August, 2021
  • 111November, 2017
  • 106May, 2019
  • 103February, 2023
  • 84July, 2019
  • 79April, 2019
  • 73September, 2018
  • 69October, 2018
  • 66May, 2022
  • 49April, 2018
  • 44March, 2020
  • 40May, 2024
  • 39February, 2018
  • 38November, 2019
  • 35December, 2017
  • 26November, 2018
  • 25February, 2020
  • 22October, 2017
  • 11September, 2017
  • 10November, 2020
  • 9January, 2019
  • 8January, 2018
  • 7December, 2018
  • 4August, 2018
  • 3December, 2019
  • 3June, 2018
  • 3March, 2019
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 2534bam
  • 2351bigWig
  • 1425tsv
  • 1098bed narrowPeak
  • 693fastq
  • 553bigBed narrowPeak
  • 288tagAlign
  • 232bed bed3+
  • 222bed broadPeak
  • 186bigBed broadPeak
  • 101txt
  • 16bed bedMethyl
  • 16bigBed bedMethyl
  • 12bedpe bed3+
  • 12hic
  • 11bed bed3
  • 8csv
  • 1tagAlign bed3+
Organism
  • 3314Homo sapiens
Biosample type
  • 2430tissue
  • 403primary cell
  • 319in vitro differentiated cells
  • 167cell line
  • 5stem cell
Organ
  • 705pancreas
  • 669connective tissue
  • 491adipose tissue
  • 377heart
  • 354liver
  • 290epithelium
  • 261brain
  • 194vasculature
  • 193blood vessel
  • 158bone element
  • 134artery
  • 130kidney
  • 117limb
  • 83musculature of body
  • 57eye
  • 43nerve
  • 26embryo
  • 25spleen
  • 18ureter
  • 16skeleton
  • 5blood
  • 5bodily fluid
  • 5gonad
  • 5ovary
  • 4vein
  • 2intestine
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3324AMP
Genome assembly (visualization)
  • 2343hg19
  • 2280GRCh38
  • 5hg18
Lab
  • 3130AMP-T2D consortium
  • 107Kyle Gaulton, UCSD
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 265inconsistent ontology term
  • 10audit script error
Audit category:
  • 77missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

3324 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
Hi-C
GRO-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
Capture-C
RRBS
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans28469366141141
adipose tissue3822313
liver16610920121311
bone element84
heart left ventricle3342183141
primary cell
pancreatic alpha cell1013612
pancreatic beta cell1012712
CD8-positive, alpha-beta T cell2332
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
adipocyte5673
cardiomyocytes593
embryonic stem cell74051
neural progenitor cell72110
pancreatic endoderm4151
cell line
EndoC_BH1311317121
smooth muscle cell of the coronary artery5248
HepG227
GM1287841
Panc12
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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