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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 118total RNA-seq
  • 90ATAC-seq
  • 89single cell RNA-seq
  • 27DNase-seq
  • 24pCHi-C
  • 11small RNA-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 3Hi-C
  • 2snDrop-seq
  • 1DNAme array
  • 1snATAC-seq
Assay category
  • 218Transcription
  • 133DNA binding
  • 121DNA accessibility
  • 33D chromatin structure
  • 1DNA methylation
Target of assay
  • 85histone
  • 85histone modification
  • 61narrow histone mark
  • 33transcription factor
  • 24broad histone mark
  • 17control
  • 9RNA binding protein
  • 2nucleotide modification
Date released
  • 61May, 2021
  • 50October, 2019
  • 47May, 2020
  • 44July, 2018
  • 42August, 2021
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 30June, 2019
  • 29February, 2023
  • 28March, 2020
  • 25February, 2020
  • 11February, 2021
  • 6October, 2017
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3March, 2019
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 371bam
  • 352bigWig
  • 237tsv
  • 128fastq
  • 123bed narrowPeak
  • 70tagAlign
  • 66bed bed3+
  • 40bigBed narrowPeak
  • 25bed broadPeak
  • 24bigBed broadPeak
  • 6bed bed3
  • 5txt
  • 3bedpe bed3+
  • 3hic
  • 2csv
  • 1tagAlign bed3+
Organism
  • 506Homo sapiens
Biosample type
  • 215tissue
  • 182primary cell
  • 108in vitro differentiated cells
  • 1stem cell
Organ
  • 108pancreas
  • 78epithelium
  • 71brain
  • 53connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 506AMP
Genome assembly (visualization)
  • 372hg19
  • 312GRCh38
Lab
  • 479AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 47inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

506 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
small RNA-seq
MeRIP-seq
FAIRE-seq
Hi-C
snDrop-seq
DNAme array
snATAC-seq
tissue
islet of Langerhans2025614
liver62111
brain612
heart21411
frontal cortex2211
primary cell
pancreatic alpha cell11
pancreatic beta cell11
pancreatic delta cell10
pancreatic ductal cell9
pancreatic acinar cell8
in vitro differentiated cells
neural progenitor cell21710
embryonic stem cell11541
cardiomyocytes12
adipocyte713
induced pluripotent stem cell9
stem cell
mesenchymal stem cell1
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