Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Embedding Matrix

Click or enter search terms to filter the experiments included in the matrix.

Embeddings type
  • 41Gene expression
  • 8Accessible chromatin
Date released
  • 32May, 2022
  • 8April, 2025
  • 4February, 2025
  • 1February, 2021
  • 1February, 2023
  • 1March, 2024
  • 1September, 2020
  • 1September, 2023
Available data
  • 43h5ad
  • 8tsv
  • 6rds
  • 4mtx
  • 1bed bed3
  • 1cloupe
  • 1tbi
Organism
  • 49Homo sapiens
Biosample type
  • 44tissue
  • 5primary cell
Organ
  • 6musculature of body
  • 5connective tissue
  • 4adipose tissue
  • 4liver
  • 4vasculature
  • 3artery
  • 3blood vessel
  • 3pancreas
  • 2bone element
  • 2epithelium
  • 2heart
  • 2intestine
  • 2kidney
  • 2mouth
  • 1blood
  • 1bodily fluid
  • 1bone marrow
  • 1eye
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1tongue
  • 1trachea
  • 1uterus
Project
  • 49AMP
Genome assembly (visualization)
  • 1hg19
software_used.software.name!
  • r
BIOSAMPLE
TYPE

49 results

search-icontable-tab-icon
Clear Filters
Gene expression
Accessible chromatin
tissue
liver31
artery21
heart3
skeletal muscle21
islet of Langerhans2
primary cell
cell1
endothelial cell1
epithelial cell1
immune system1
stromal cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego