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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 456ChIP-seq
Assay category
  • 456DNA binding
Target of assay
  • 926histone modification
  • 925histone
  • 503transcription factor
  • 468narrow histone mark
  • 456broad histone mark
  • 339control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 109August, 2017
  • 58May, 2019
  • 55October, 2019
  • 50November, 2017
  • 37April, 2019
  • 32May, 2021
  • 20May, 2024
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10October, 2017
  • 8August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2019
  • 4January, 2019
Available data
  • 382bigWig
  • 375bed narrowPeak
  • 334bam
  • 242bigBed narrowPeak
  • 118fastq
  • 103tagAlign
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 452Homo sapiens
Biosample type
  • 303tissue
  • 78primary cell
  • 56in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 78pancreas
  • 70brain
  • 57heart
  • 45blood vessel
  • 45vasculature
  • 44connective tissue
  • 44epithelium
  • 41liver
  • 34limb
  • 20adipose tissue
  • 20musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 9vein
  • 4embryo
  • 4spleen
Project
  • 456AMP
Genome assembly (visualization)
  • 348GRCh38
  • 326hg19
Lab
  • 406AMP-T2D consortium
  • 30Kyle Gaulton, UCSD
  • 20Patrick T. Ellinor, Broad
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

456 results

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Clear Filters
ChIP-seq
tissue
liver22
left cardiac atrium20
subcutaneous abdominal adipose tissue20
tibial nerve16
heart left ventricle15
primary cell
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein9
pancreatic ductal cell6
skeletal muscle myoblast6
in vitro differentiated cells
adipocyte20
embryonic stem cell11
hepatocyte7
neural progenitor cell7
pancreatic endoderm4
cell line
HepG28
EndoC_BH16
Panc14
stem cell
hESC1
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