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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
9
total RNA-seq
5
ATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
9
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
38
August, 2021
3
February, 2023
Available data
19
bigWig
18
bed narrowPeak
9
tsv
3
bed bedgraph
3
txt
2
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
41
Homo sapiens
Biosample type
tissue
34
cell line
7
in vitro differentiated cells
Organ
31
liver
4
connective tissue
2
kidney
Project
41
AMP
Genome assembly (visualization)
22
hg19
Lab
34
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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